View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20072_low_43 (Length: 247)
Name: NF20072_low_43
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 1303494 - 1303275
Alignment:
| Q |
17 |
caaattcgaaagccttgcaatgcagaatataaacattttttgaatgcatcgtaatccgtatttagttactacctctgtccctatgtgcaagaccctattg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1303494 |
caaatttgaaagccttgcaatgcagaatataaacattttttgaatgcatcgtaatccgtatttagttactacctctgtccctatgtgcaagaccctattg |
1303395 |
T |
|
| Q |
117 |
atcaaatcacaagcattaaggaaaatagtttttacattaaatttgtctatagtgttcattctatttccaaaatcatccttgaattaataaatgggagaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1303394 |
atcaaatcacaagcattaaggaaaatagtttttacattaaatctgtctatagtgttcattctatttccaaaatcatccttgaattaataaatgggagaaa |
1303295 |
T |
|
| Q |
217 |
tggttggtcttttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1303294 |
tggttggtcttttcgttctt |
1303275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 36028604 - 36028684
Alignment:
| Q |
105 |
aagaccctattgatcaaatcacaagcattaaggaaaatagtttttacattaaatttgtctatagtgttcattctatttcca |
185 |
Q |
| |
|
|||||||| ||||| ||| ||||| |||||| |||||||||||| ||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
36028604 |
aagacccttttgataaaagcacaatgattaagaaaaatagtttttgcattaaatttgtcgataatgtacattctatttcca |
36028684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 47500924 - 47500845
Alignment:
| Q |
83 |
tactacctctgtccctatgtgcaagaccctattgatcaaatcacaagcattaaggaaaatagtttttacattaaatttgtc |
163 |
Q |
| |
|
||||||||||||| |||| | ||||||||| ||||| ||| |||||| ||||| |||||| |||||| ||||||||||||| |
|
|
| T |
47500924 |
tactacctctgtctctatatacaagacccttttgataaaagcacaagaattaa-gaaaattgtttttgcattaaatttgtc |
47500845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University