View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20072_low_7 (Length: 608)
Name: NF20072_low_7
Description: NF20072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20072_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 108 - 599
Target Start/End: Complemental strand, 10726079 - 10725588
Alignment:
| Q |
108 |
aatagtaaaccatagtaaggatataactagataggaagtctctaattaagaaaaatgtaaatgaagctgttgagatatttggcatattgtaggaaaggta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10726079 |
aatagtaaaccatagtaaggatataactagataggaagtctctaattcagaaaaatgtaaatgaagccgttgagatatttggcatattgtaggaaaggta |
10725980 |
T |
|
| Q |
208 |
tctgtggagggaaaaatagtgaacaagtttgacatgaagccacatgatcaaaaccttgaagtctacgggaaactctgtcgcgaaaggacaaaaaagtata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10725979 |
tctgtggagggaaaaatagtgaacaagtttgacatgaagccacatgatcaaaaccttgaagtctacgggaaactctgtcgcgaaaggacaaaaaagtata |
10725880 |
T |
|
| Q |
308 |
tggtcaaaaacagacagatacaggttttctaatggttttcattctctttatatgatttgatccaatgattttggcaaacattttatttacctttgacttc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10725879 |
tggtcaaaaacagacagatacaggttttctaatggttttcattctctttatatgatttgatccaatgattttggcaaacattttatttacctttgacttc |
10725780 |
T |
|
| Q |
408 |
acctgaactctattttcaggttattggcaatgataatggagctcgtatgaggccaatgccagggatcactttttcagtttcttctggacctactaaagta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10725779 |
acctgaactctattttcaggttattggcaatgataatggagctcgtatgaggccaatgccagggatcactttttcagtttcttctggacctactaaggta |
10725680 |
T |
|
| Q |
508 |
aataaattccttattcttcttcgtcttcctattgtgactgatttctgtctcgatgattgcattttcatgccaaaagaaactttccttcttct |
599 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10725679 |
aataaattccttattcttcttcatcttcctattgtgactgatttctgtctcgatgattgcattttcatgccaaaagaaactttccttcttct |
10725588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University