View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_high_13 (Length: 317)
Name: NF20073_high_13
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_high_13 |
 | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19415597 - 19415287
Alignment:
| Q |
1 |
cactcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
19415597 |
cactcccattcctagatacaatgaatctttcatagaatcataatcttcattctttgttgatggcgttgcagttgtaggattttcttctttgatggtacaa |
19415498 |
T |
|
| Q |
101 |
ttattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19415497 |
ttattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattgggatttttccgtcaaaactgt |
19415398 |
T |
|
| Q |
201 |
tgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatt |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19415397 |
tgtaagataaatttaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaggtctagagattccatatt |
19415298 |
T |
|
| Q |
301 |
tttcatctcac |
311 |
Q |
| |
|
|||||| |||| |
|
|
| T |
19415297 |
tttcatgtcac |
19415287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19355127 - 19354823
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || || | ||||||||| ||||| |||||| |||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
19355127 |
actcccatgcctagatacaatgattctttgatagagtcgtcatcttcattttttgtagatggcattgcagttttaggattttcttctttcttggtacaat |
19355028 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
19355027 |
tattgagaggagctccgcatagtttaggatttccaacgtaacttgatgcattaaaactttgaagttgagttcctattgggatttttccgtcaaaattgtt |
19354928 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||| || ||||||||| | |||| ||| ||||||||||||||| |
|
|
| T |
19354927 |
gtaagataaattcaaataacctaaaaaggttaagagagacatgctctgaggaatgtcaccataaaacttattactagagaggtcaagagattccatattt |
19354828 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
19354827 |
ttcat |
19354823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19335424 - 19335120
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||| ||| |||||||||||||| ||| | | || || | ||||||||| | |||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
19335424 |
actctcatccctagatacaatgattctcttaaagagtcgtcatcttcattatctgttgatggcattgcagttttaggattttcttctttcatggtacaat |
19335325 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| |||| |||||||| ||||||||||| |
|
|
| T |
19335324 |
tattgagaggagctccgcacagtttaggattcccaatgtaactcgatgcattaaaactttgaagttgtgttccagttgggatttttccttcaaaactgtt |
19335225 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| || ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
19335224 |
gtaagataaattcaaataacccaaaaaggttaagacagacatgctccgaggaatttcaccataaaacttattattagagagatcgagagattccatattt |
19335125 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
|||| |
|
|
| T |
19335124 |
atcat |
19335120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 18872466 - 18872770
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| || ||||||| ||| ||| | || ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
18872466 |
actcccatgccaagatacattgattctcttatagaagcataatcttcattctttgtagatggctttgcagttttaggattttcttcttttgtggtacaat |
18872565 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
18872566 |
tattgagaggatctccgcatagtttaggattcccaatgcaactcgatgcattaaaactttgaagttgagttccaattggaatttttccttcaaaactgtt |
18872665 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| | |||||||||||||||||||||||| | ||||||||| | |||| || |||||||||||||| |
|
|
| T |
18872666 |
gtaagataaattcaaataacccataaagtgtaacagagacatgctctgaggaatttcaccacaaaacttattactagagagatcgagagattccatattg |
18872765 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
18872766 |
ttcat |
18872770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19426102 - 19425798
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
19426102 |
actcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagatggtgttgcagttttaggattttcttctttcatggtacaat |
19426003 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| ||||| |||| |||||||||| ||| | || |
|
|
| T |
19426002 |
tattgagaggagctccgcatagtttaggattcccaatgtaactcgatgcattaattctttgaagttgtgttccagttgggatttttccgtttaaattatt |
19425903 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
19425902 |
gcaagataaattcaaaaaacccaaaaaggttaagacagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagattccatattt |
19425803 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
19425802 |
ttcat |
19425798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19394561 - 19394257
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || || | ||||||||||| ||| ||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
19394561 |
actcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagttttaggattttcttcttctgcggtacaat |
19394462 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
19394461 |
tactaagtggagctccacatagtttaggattcccaatataactcgatgcattaaaactttgaagttgagttcctattgggatttttccgtcaaaattgtt |
19394362 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||| || |||||| |||||||||||||| || ||||||||||| || | || |||||||||| |||| |
|
|
| T |
19394361 |
gtaagatagattcaaataacccaaaaagtttaagagagccatgctttgaggaatttcaccataaaacttattattggaaagatcgagagattccaaattt |
19394262 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
19394261 |
ttcat |
19394257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 97 - 306
Target Start/End: Complemental strand, 19376939 - 19376730
Alignment:
| Q |
97 |
acaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19376939 |
acaattattaagaggagctccgcatagtttaggattcccaatgtaactcgatgcattaaaactttgaagttgagttcctattggaatttttccatcaaaa |
19376840 |
T |
|
| Q |
197 |
ctgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattcca |
296 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||| || ||||||||| | |||| ||| |||||||||| |
|
|
| T |
19376839 |
ttgttgtaagatagattcaaataacccaaaaaggttaagatagacatggtctgaggaatttcaccataaaacttattactagagaggtcaagagattcca |
19376740 |
T |
|
| Q |
297 |
tatttttcat |
306 |
Q |
| |
|
|||| ||||| |
|
|
| T |
19376739 |
tattcttcat |
19376730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 18166532 - 18166264
Alignment:
| Q |
38 |
tcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgt |
137 |
Q |
| |
|
|||| ||||||||||||||| || ||| |||||||| ||| ||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
18166532 |
tcatcatcttcattctttgtagacggcgttgcagttttagaatttttttcttttgtggtacaattactaagaggagctccacatagtttaggattctcaa |
18166433 |
T |
|
| Q |
138 |
tgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaa |
237 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
18166432 |
tataacttgatgcattaaaactttgaagttgagttcctattgggattattccgtcaaagttattgtaagataaattcaaataacctaaaaaggttaagag |
18166333 |
T |
|
| Q |
238 |
agacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
||| |||||||||||||||||||| || ||||||||| | |||| ||| |||||||||||||||||||| |
|
|
| T |
18166332 |
agagatgctctgaggaatttcaccataaaacttattactagagaggtcgagagattccatatttttcat |
18166264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 17726125 - 17726429
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||| ||||||||||||||| || ||||| | || ||||||||||||||| |||| ||||| |
|
|
| T |
17726125 |
actcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaactttgaatttttaggattttcttcttctatggtacaat |
17726224 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
17726225 |
tattaagaggagctccgcatagataatgattcccaatataactcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaacttgtt |
17726324 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| | || ||||| || |||| ||| |||||||||| |||| |
|
|
| T |
17726325 |
gtaagataaattcaaataacccaaaaagtgtaacgaagacatgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaattt |
17726424 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
17726425 |
ttcat |
17726429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 19027354 - 19027658
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||| ||||||||||||||| || ||||| | || ||||||||||||||| |||| ||||| |
|
|
| T |
19027354 |
actcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaactttgaatttttaggattttcttcttctatggtacaat |
19027453 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
19027454 |
tattaagaggagctccgcatagataatgattcccaatataactcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaacttgtt |
19027553 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| | || ||||| || |||| ||| |||||||||| |||| |
|
|
| T |
19027554 |
gtaagataaattcaaataacccaaaaagtgtaacgaagacatgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaattt |
19027653 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
19027654 |
ttcat |
19027658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19382305 - 19382001
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| ||||||||||| || ||| | || || |||| ||||||||||| ||| |||||| ||||||| |||||||||||||| | |||| ||||| |
|
|
| T |
19382305 |
actcccatgcctagatacaacgactctattatagattcatcatcttcattctctgtagatggcagtgcagttttaggattttcttctgttatggtacaat |
19382206 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||| | || |
|
|
| T |
19382205 |
tattaagaggagctccgcatagtttaggattcccaatataacttgatgcattaaaactttgaagttgagttcctgttgggatttttccatcaaaattatt |
19382106 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||| || |||||| |||||||||||||| | ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
19382105 |
gcaagataaattcaacacctccaaaaagtttaagagagccatgctttgaggaatttcaccaaaaaacttattattagagagatcgagagattccatattt |
19382006 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
|||| |
|
|
| T |
19382005 |
atcat |
19382001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 17943351 - 17943062
Alignment:
| Q |
17 |
tacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattattaagaggagctc |
116 |
Q |
| |
|
|||| ||| ||||| || || |||| ||||||||||| ||| || |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
17943351 |
tacagtgattcttttatagagtcatcatcttcattctctgtggacggctttgcagttttaggattttcttctttcgtggtacaattattaagaggagctc |
17943252 |
T |
|
| Q |
117 |
cgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgtaagataaattcaa |
216 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| | ||| ||||||||||||| |
|
|
| T |
17943251 |
cacatagtttaggattcccaatgtaactcgatgcattaaaactttgaagttgagttccaattgggatttttccatcaaaattattgcaagataaattcaa |
17943152 |
T |
|
| Q |
217 |
ataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
17943151 |
cacccccaaaaaatttaagagagccatgctctgaggaatttcaccaaaaaacttattattagagagatctagagattccatatttgtcat |
17943062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 19465753 - 19465467
Alignment:
| Q |
13 |
tagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattattaagagga |
112 |
Q |
| |
|
|||||||||||| ||||| || || |||| ||| ||||||| ||| |||||| ||||||| |||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
19465753 |
tagatacaatgattcttttatcgattcatcatcctcattctctgtagatggcagtgcagttttaggattttcttctgttatggtacaattattaagagga |
19465654 |
T |
|
| Q |
113 |
gctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgtaagataaat |
212 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||| |
|
|
| T |
19465653 |
gctccgcatagtttaggattcccaatataacttgatacattaaaactttgaagttgagttcctattggaatttttccatcaaaattattgcaagataaat |
19465554 |
T |
|
| Q |
213 |
tcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatt |
300 |
Q |
| |
|
|||| |||||||| ||| ||| || ||||||||||||||||||||| | ||||||||||| |||| || |||||||||||||| |
|
|
| T |
19465553 |
tcaacacctccaaaaa-gtttagagagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccatatt |
19465467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 18017434 - 18017130
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||| ||| ||||||| ||| |||||| |||||||| |||||||||||||| | |||| ||||| |
|
|
| T |
18017434 |
actcccatgcctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcagttttaggattttcttctgttatggtacaat |
18017335 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| | ||||||||||| | | ||||||||||||||||||| |||| |||||||| |||||| | || |
|
|
| T |
18017334 |
tattaagaggagccccgcacagtttaggattcccaatataacttgatgcatcacgactttgaagttgagttcctgttgggatttttccatcaaaattatt |
18017235 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| ||||||||||||| |||||||| |||||| || ||||||||||||||||||||| | ||||||||||| |||| || ||||||||||| ||| |
|
|
| T |
18017234 |
gcaagataaattcaacacccccaaaaagtttaagagagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccattttt |
18017135 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
18017134 |
ttcat |
18017130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 62 - 306
Target Start/End: Original strand, 14895038 - 14895282
Alignment:
| Q |
62 |
ggctttgcagttgtaggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaacttt |
161 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| |||||| | | |||||||||||||||||||||||| || |||| || ||| | |||||||||| |
|
|
| T |
14895038 |
ggcttttcagtgttaggattttcttcttctgtggtacaattggttacaggagctccgcatagtttaggatttccaatgtagctcgattcattaaaacttt |
14895137 |
T |
|
| Q |
162 |
gaagttgagttcctattggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcacc |
261 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
14895138 |
gaagttgagttcctgttggaatttttccgtcaaaattgttgtaagataaattcaaataacccaaaaatgttaagagagacatgctctgcggaatttcacc |
14895237 |
T |
|
| Q |
262 |
gtagaacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
|| ||||||||| | |||| ||| |||||||||||||| ||||| |
|
|
| T |
14895238 |
ataaaacttattactagagaggtcaagagattccatattcttcat |
14895282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 19352804 - 19352500
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||| | ||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
19352804 |
actcccatgcctagatacaatgattcttttatggagtcatcaccttcattctctgttgatggcgttgcagtcttaggattttcttctttcatggtacaat |
19352705 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||| |||| |||||||| | ||| | || |
|
|
| T |
19352704 |
tattaagaggagctccacatagtctaggattcccaatgtaacttgatgcattaaaactttgaagttgtgttccagttgggatttttccattgaaattatt |
19352605 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| |||||||||| ||| || |||||| ||| | || |||| |||| ||||||||||| | ||||||||||| |||| || |||||||||| |||| |
|
|
| T |
19352604 |
gcaagataaatttaaaacctctaaaaagtttaggcgagccatggtctgcggaatttcaccaaaaaacttattattagagagatcgagagattccacattt |
19352505 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
19352504 |
ttcat |
19352500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 306
Target Start/End: Complemental strand, 19456645 - 19456405
Alignment:
| Q |
66 |
ttgcagttgtaggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaag |
165 |
Q |
| |
|
||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| ||| ||||| || |||| || |||||||||||||||||||| |
|
|
| T |
19456645 |
ttgcagtcttaggattttcttcttccttggtacaattattaagaggagctccgcataattttggatttccaatgtagctcgatgcgttaaaactttgaag |
19456546 |
T |
|
| Q |
166 |
ttgagttcctattggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtag |
265 |
Q |
| |
|
||| ||| |||| || ||||||| ||||||| | ||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
19456545 |
ttgcgttgctatcgggatttttctgtcaaaattattgtatgataaattcaaataacccaaaaaggttaagagagacatgctctgtggaatttcaccacaa |
19456446 |
T |
|
| Q |
266 |
aacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
|||||||| || || || || |||||||||||||||||||| |
|
|
| T |
19456445 |
aacttatttttggaaaattcgagagattccatatttttcat |
19456405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 306
Target Start/End: Complemental strand, 18117306 - 18117076
Alignment:
| Q |
76 |
aggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcct |
175 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||||||| ||||||| ||| ||||| || |||| |||||||| ||||||||||||||||| ||| || |
|
|
| T |
18117306 |
aggattttcttcttccgtggtacagttattaagaggagcgccgcataattttggattgccaatgtagcttgatgcattaaaactttgaagttgcgttgct |
18117207 |
T |
|
| Q |
176 |
attggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattat |
275 |
Q |
| |
|
||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| | | |||||||| |
|
|
| T |
18117206 |
attgggatttttccgtcaaaattattgtatgataaattcaaataacccaaaaaagttaagagagacatgctctgaggaatttcaccacaaagcttattat |
18117107 |
T |
|
| Q |
276 |
ttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
| || || || |||||||||||||||||||| |
|
|
| T |
18117106 |
tagaaaaatcgagagattccatatttttcat |
18117076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 76 - 306
Target Start/End: Complemental strand, 19462530 - 19462300
Alignment:
| Q |
76 |
aggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcct |
175 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||||||| ||||||| ||| ||||| || |||| |||||||| ||||||||||||||||| ||| || |
|
|
| T |
19462530 |
aggattttcttcttccgtggtacagttattaagaggagcaccgcataattttggattgccaatgtagcttgatgcattaaaactttgaagttgcgttgct |
19462431 |
T |
|
| Q |
176 |
attggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattat |
275 |
Q |
| |
|
||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||| | | |||||||| |
|
|
| T |
19462430 |
attgggatttttccgtcaaaattattgtatgataaattcaaataacccaaaaaagttaagagagacatgctccgaggaatttcaccacaaagcttattat |
19462331 |
T |
|
| Q |
276 |
ttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
| || || || |||||||||||||||||||| |
|
|
| T |
19462330 |
tagaaaaatcgagagattccatatttttcat |
19462300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 76 - 306
Target Start/End: Complemental strand, 18148168 - 18147938
Alignment:
| Q |
76 |
aggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcct |
175 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||| || |||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
18148168 |
aggattttcttcttccgtggtacaattattaaggggagctccgcatagtttaggattgccaatgtagctcgatgcattaaaactttgaagttgtgttccg |
18148069 |
T |
|
| Q |
176 |
attggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattat |
275 |
Q |
| |
|
|| || ||| ||||||||||| | || || ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| | ||||| |||| |
|
|
| T |
18148068 |
atcgggattcttccgtcaaaattattatatgataaattcaaataactcaaaaaggttaagagagacatgccctgaggaatttcaccaaaaaacttgttat |
18147969 |
T |
|
| Q |
276 |
ttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
| |||| ||| ||||||| |||||||||||| |
|
|
| T |
18147968 |
tagagaggtcgagagatttcatatttttcat |
18147938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 107 - 306
Target Start/End: Complemental strand, 16678517 - 16678318
Alignment:
| Q |
107 |
agaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgtaag |
206 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||| || ||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||| ||| |
|
|
| T |
16678517 |
agaggagctccgcataattttggattgccaatgtagctcgatgcattaaaactttgaagttgagttcctatcgggatttttccgtcaaaattgttgcaag |
16678418 |
T |
|
| Q |
207 |
ataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
| |||||||||||| |||||||| |||||| |||| ||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
16678417 |
acaaattcaaataacccaaaaagtttaagagagacgcactctgaggaatttcaccagaaaacttattattagagaagtcgagagattccatatttttcat |
16678318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 19438297 - 19438066
Alignment:
| Q |
75 |
taggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcc |
174 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||| |||| |||| ||||||||| || |||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
19438297 |
taggattttcttcttccgtggtacaattattaagaggaactccacataatttaggattgccaatgtagctcgatgcattaaaactttgaagttgcgttcc |
19438198 |
T |
|
| Q |
175 |
tattggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttatta |
274 |
Q |
| |
|
|| || ||| ||||||||||| | || || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| ||| |
|
|
| T |
19438197 |
gatcgggattcttccgtcaaaattattatatgataaattcaaataatccaaaaaggttaagagagacatgccttgaggaatttcaccaaaaaacttgtta |
19438098 |
T |
|
| Q |
275 |
tttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
|| || | || |||||||||||||||||||| |
|
|
| T |
19438097 |
ttagatagatcgagagattccatatttttcat |
19438066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 17951174 - 17950943
Alignment:
| Q |
75 |
taggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcc |
174 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||| |||| |||| |||| || |||| || ||||| ||||||||||||||||| || || |
|
|
| T |
17951174 |
taggattttcttcttccgtggaacaattattaagaggagatccacataatttaagattgccaatgtagctcgatgcattaaaactttgaagttgtgtacc |
17951075 |
T |
|
| Q |
175 |
tattggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttatta |
274 |
Q |
| |
|
| || |||||||| |||||| | || || ||||||||||||||| ||||||||| |||| |||||| | |||||||||||||| | ||||| ||| |
|
|
| T |
17951074 |
gaccgggatttttccatcaaaattattatatgataaattcaaataactcaaaaaggtcaagagagacataccatgaggaatttcaccaaaaaacttgtta |
17950975 |
T |
|
| Q |
275 |
tttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||| |
|
|
| T |
17950974 |
ttagagaggtcgagagattccatatttttcat |
17950943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 18109777 - 18109550
Alignment:
| Q |
79 |
attttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctatt |
178 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||| ||| |||| ||| ||||| || |||| || ||||| ||||||||||||||||| || || | | |
|
|
| T |
18109777 |
attttcttcttccgtggtacaattattaagaggagatccacataattttggattgccaatgtagctcgatgcattaaaactttgaagttgtgtaccgact |
18109678 |
T |
|
| Q |
179 |
ggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttg |
278 |
Q |
| |
|
|| |||||||| |||||| | || || ||||||||||||||| |||||||||| |||| |||||| | ||| ||||||||||| | ||||| ||||| | |
|
|
| T |
18109677 |
gggatttttccatcaaaattattatatgataaattcaaataacccaaaaaggtcaagagagacataccctggggaatttcaccaaaaaacttgttattag |
18109578 |
T |
|
| Q |
279 |
agaagtctagagattccatatttttcat |
306 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
18109577 |
agaggtcgagagattccatatttttcat |
18109550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 18104846 - 18104689
Alignment:
| Q |
76 |
aggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcct |
175 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
18104846 |
aggattttcttctttcctggtacagttattaagaggagctccgcatagtttaggattgccaatgtagcttgatgcattaaaactttgaagttgtgttccg |
18104747 |
T |
|
| Q |
176 |
attggaatttttccgtcaaaactgttgtaagataaattcaaataatccaaaaaggtta |
233 |
Q |
| |
|
| || ||| ||||||||||| | || || ||||||||||||||| |||||||||||| |
|
|
| T |
18104746 |
gtcgggattcttccgtcaaaattattatatgataaattcaaataacccaaaaaggtta |
18104689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 25464465 - 25464158
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcata---atcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaac |
98 |
Q |
| |
|
||||||| |||||||||||||| ||||| || || |||| ||||||| |||||| || || ||||| || |||||||||||||||| ||| || |
|
|
| T |
25464465 |
actcccaagcctagatacaatgattcttttatagagtcatcgttatcttcactctttgcagacggtgttgcatttttaggattttcttcttttgtggtac |
25464366 |
T |
|
| Q |
99 |
aattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaact |
198 |
Q |
| |
|
| | ||||||||| |||||||| ||| ||||| || |||| || ||||| ||||||||||||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
25464365 |
actctttaagaggaagtccgcataattttggattgccaatgtagctcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaaatt |
25464266 |
T |
|
| Q |
199 |
gttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccata |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | || ||| ||||||||| |||| | | ||| ||||| || | || |||||||||||| |
|
|
| T |
25464265 |
gttgtaagataaattcaaataactcaaaaagtttaagagaaccaggctttgaggaattccaccacaaagcttgttattagaaagatcgagagattccata |
25464166 |
T |
|
| Q |
299 |
tttttcat |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
25464165 |
tttttcat |
25464158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 306
Target Start/End: Complemental strand, 19401046 - 19400837
Alignment:
| Q |
97 |
acaattattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaa |
196 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| || || | ||||||| | |||| |||||| ||||| ||||||||| ||| ||||||||||| |
|
|
| T |
19401046 |
acaatttttaagaggagctccgcataactttggatttccaatgaagcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaa |
19400947 |
T |
|
| Q |
197 |
ctgttgtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattcca |
296 |
Q |
| |
|
| ||| |||||||||||||| || |||||| |||||| || ||||||||||||||||||||| | ||||||||||| |||| || |||||||||| |
|
|
| T |
19400946 |
ttattgcaagataaattcaaaacctctaaaaagtttaagagagccatgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattcca |
19400847 |
T |
|
| Q |
297 |
tatttttcat |
306 |
Q |
| |
|
||| |||||| |
|
|
| T |
19400846 |
tatgtttcat |
19400837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 18104530 - 18104454
Alignment:
| Q |
230 |
gttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttcat |
306 |
Q |
| |
|
||||||| || |||| ||||||||||||||| | ||||| ||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
18104530 |
gttaagagagtcatgtcctgaggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcat |
18104454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 13665577 - 13665834
Alignment:
| Q |
43 |
atcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattattaagaggagctccgcatagtttaggattcccgttgtaa |
142 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| | ||| |
|
|
| T |
13665577 |
atcttcattctttgtagatggtgttgcagttctaggattttcttctttcatggtacaattattaagaggagctccacaaagtttaggattcccaatataa |
13665676 |
T |
|
| Q |
143 |
cttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgtaagataaattcaa--ataatccaaaaaggttaagaaaga |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
13665677 |
cttgatgcattaaaactttgaagttgagttcctatagggatttttccgtcaaaattgttgtgagataaattcaaatatattccaaaaaggttaagataga |
13665776 |
T |
|
| Q |
241 |
catgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccata |
298 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||| |||||||| | |||||||||| |
|
|
| T |
13665777 |
catgctccgaggaatttcaccaaaaaacttattattagagaagtccaaagattccata |
13665834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 8460978 - 8460674
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| || ||||||||||| ||| | || || |||| ||||||||||| ||| || ||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
8460978 |
actcccatgccaagatacaatgattctcttatagagtcatcatcttcattctctgtagacggcattgcagttttaggattttcttctttcgtggtacaac |
8460879 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| || |||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | || |
|
|
| T |
8460878 |
tactaagaggagctccgcacagtttaggatttccaatgtagctcgatgcattaaaactttgaagttgagttccaattgggatttttccgtcaaaattatt |
8460779 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| |||||||||||||| || |||||| |||||| || ||||||||||||||||||||| | ||||||||||| |||| ||| || |||||||||| | |
|
|
| T |
8460778 |
gcaagataaattcaaaacctctaaaaagtttaagagagccatgctctgaggaatttcaccacaaaacttattattagagaggtcgagtgattccatatat |
8460679 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
8460678 |
ttcat |
8460674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 15536945 - 15536641
Alignment:
| Q |
2 |
actcccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaat |
101 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | || |||| ||||||||||| ||| ||||| |||| ||| | ||||||||||||||| ||| ||||| |
|
|
| T |
15536945 |
actcccatccctagatacaatgattctttgttagagtcatcatcttcattctctgtggatggtgttgcggttttgggattttcttctttcttggtacaat |
15536846 |
T |
|
| Q |
102 |
tattaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgtt |
201 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| | ||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| | ||| | || |
|
|
| T |
15536845 |
tattgagaggagctccacacagtttaggattctcaatgtaactcgatgcattaaaactttgaagttgtgttccaattgggatttttccattgaaattatt |
15536746 |
T |
|
| Q |
202 |
gtaagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| | ||||| | |||||||||||||| || ||||||||||| |||| || ||||||||||| ||| |
|
|
| T |
15536745 |
gcaagataaattcaaataacccaaaaaggttaagacaaacatgttttgaggaatttcaccataaaacttattattagagagatcgagagattccatgttt |
15536646 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
|||| |
|
|
| T |
15536645 |
atcat |
15536641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 2709263 - 2709465
Alignment:
| Q |
104 |
ttaagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgt |
203 |
Q |
| |
|
||||||||||||||||||| || || ||||| |||| || || || |||||||| ||||||||||| |||||||| |||||||| | |||| | ||| |
|
|
| T |
2709263 |
ttaagaggagctccgcataattgtgggttcccaatgtagctcgaagcattaaaactctgaagttgagtccctattgggatttttccattaaaattattgc |
2709362 |
T |
|
| Q |
204 |
aagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattttt |
303 |
Q |
| |
|
|||||||||| ||| || ||| |||||| || || ||||||||||||||||||||| | || ||||| || |||| || ||||||||||| ||||| |
|
|
| T |
2709363 |
aagataaatttaaaacctctaaataggttatgatagccatgctctgaggaatttcaccaaaaaatttattgttagagagatcgagagattccatgttttt |
2709462 |
T |
|
| Q |
304 |
cat |
306 |
Q |
| |
|
||| |
|
|
| T |
2709463 |
cat |
2709465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 11910 - 11609
Alignment:
| Q |
5 |
cccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattat |
104 |
Q |
| |
|
||||| || ||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||||| |||||||||||||||| ||| ||| | | |
|
|
| T |
11910 |
cccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagttttaggattttcttcttttgtggtacagcttt |
11811 |
T |
|
| Q |
105 |
taagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgta |
204 |
Q |
| |
|
||||||||| || ||||| || ||||| | | || || ||||| |||||||||||||||||||| || ||||| || |||||| |||| ||||| | |
|
|
| T |
11810 |
taagaggagttctgcataattctggattggcaatatagctcgatgcattaaaactttgaagttgagtccccattggtatagttccgttaaaattgttgca |
11711 |
T |
|
| Q |
205 |
agataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttc |
304 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||| |||||||||||||||||||||||| | ||||||||||| |||| || ||||| |||||||||||| |
|
|
| T |
11710 |
agataagttcaaataacccaagaagtttaagtgagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttc |
11611 |
T |
|
| Q |
305 |
at |
306 |
Q |
| |
|
|| |
|
|
| T |
11610 |
at |
11609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 6812 - 6514
Alignment:
| Q |
5 |
cccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattat |
104 |
Q |
| |
|
||||| || ||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||||| |||||||||||||| | || ||| || | |
|
|
| T |
6812 |
cccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagttataggattttcttctgt---ggtacagtttt |
6716 |
T |
|
| Q |
105 |
taagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctattggaatttttccgtcaaaactgttgta |
204 |
Q |
| |
|
||||||||| |||||||| || ||||| | | || || ||||| |||||||||||||||||||| || ||||| || |||||| |||| ||||| | |
|
|
| T |
6715 |
taagaggagttccgcataattctggattggcaatatagctcgatgcattaaaactttgaagttgagtccccattggtatagttccgttaaaattgttgca |
6616 |
T |
|
| Q |
205 |
agataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatatttttc |
304 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||| |||||||||||||||||||||||| | ||||||||||| |||| || ||||| |||||||||||| |
|
|
| T |
6615 |
agataagttcaaataacccaagaagtttaagtgagacatgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttc |
6516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 2691 - 2993
Alignment:
| Q |
5 |
cccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattat |
104 |
Q |
| |
|
||||| || ||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||||| ||||||||||||||| ||| | | || | |
|
|
| T |
2691 |
cccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagttttaggattttcttcttctgtggtatagtttt |
2790 |
T |
|
| Q |
105 |
taagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctatt-ggaatttttccgtcaaaactgttgt |
203 |
Q |
| |
|
||||||||| |||||||| || ||||| | | || || ||||| |||||||||||||||||||| || ||| || || |||||| |||| ||||| |
|
|
| T |
2791 |
taagaggagttccgcataattctggattggcaatatagctcgatgcattaaaactttgaagttgagtccccatttggtatagttccgttaaaattgttgc |
2890 |
T |
|
| Q |
204 |
aagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattttt |
303 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| |||||||||| ||||||||||||| | ||||||||||| |||| || ||||| ||||||||||| |
|
|
| T |
2891 |
aagataagttcaaataacccaaaaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatattttt |
2990 |
T |
|
| Q |
304 |
cat |
306 |
Q |
| |
|
||| |
|
|
| T |
2991 |
cat |
2993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 21995 - 21693
Alignment:
| Q |
5 |
cccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattat |
104 |
Q |
| |
|
||||| || ||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||||| ||||||||||||||| ||| | | || | |
|
|
| T |
21995 |
cccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagttttaggattttcttcttctgtggtatagtttt |
21896 |
T |
|
| Q |
105 |
taagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaactttgaagttgagttcctatt-ggaatttttccgtcaaaactgttgt |
203 |
Q |
| |
|
||||||||| |||||||| || ||||| | | || || ||||| |||||||||||||||||||| || ||| || || |||||| |||| ||||| |
|
|
| T |
21895 |
taagaggagttccgcataattctggattggcaatatagctcgatgcattaaaactttgaagttgagtccccatttggtatagttccgttaaaattgttgc |
21796 |
T |
|
| Q |
204 |
aagataaattcaaataatccaaaaaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattttt |
303 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| |||||||||| ||||||||||||| | ||||||||||| |||| || ||||| ||||||||||| |
|
|
| T |
21795 |
aagataagttcaaataacccaaaaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatattttt |
21696 |
T |
|
| Q |
304 |
cat |
306 |
Q |
| |
|
||| |
|
|
| T |
21695 |
cat |
21693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 2161 - 2462
Alignment:
| Q |
5 |
cccattcctagatacaatgaatctttcattgaatcataatcttcattctttgttgatggctttgcagttgtaggattttcttctttcatggaacaattat |
104 |
Q |
| |
|
||||| || ||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||||| |||||||||||||| | || ||| || | |
|
|
| T |
2161 |
cccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagttataggattttcttctgt---ggtacagtttt |
2257 |
T |
|
| Q |
105 |
taagaggagctccgcatagtttaggattcccgttgtaacttgatgcgttaaaa-ctttgaagttgagttcctatt-ggaatttttccgtcaaaactgttg |
202 |
Q |
| |
|
||||||||| |||||||| || ||||| | | || || ||||| |||||| |||||||||||||| || ||| || || |||||| |||| ||||| |
|
|
| T |
2258 |
taagaggagttccgcataattctggattggcaatatagctcgatgcattaaaaactttgaagttgagtccccatttggtatagttccgttaaaattgttg |
2357 |
T |
|
| Q |
203 |
taagataaattcaaataatccaaa-aaggttaagaaagacatgctctgaggaatttcaccgtagaacttattatttgagaagtctagagattccatattt |
301 |
Q |
| |
|
||||||| ||||||||| || || ||| ||||| |||||||||| ||||||||||||| | ||||||||||| |||| || ||||| ||||||||| |
|
|
| T |
2358 |
caagataagttcaaataaacccaagaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagatcgagagactccatattt |
2457 |
T |
|
| Q |
302 |
ttcat |
306 |
Q |
| |
|
||||| |
|
|
| T |
2458 |
ttcat |
2462 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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