View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20073_high_4 (Length: 434)
Name: NF20073_high_4
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 49592373 - 49592797
Alignment:
| Q |
6 |
agaatctaaggtctttcccagttgaaatgtcataaaatttcctcaagaacaagttgaactttttatgaatgaatctaacggtagaatctgggatttcaaa |
105 |
Q |
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| T |
49592373 |
agaatctaaggtctttcccagttgaaatgtcataaaatttcctcaagaacaagttgaactttttatgaatgaatctaacggtagaatctgggatttcaaa |
49592472 |
T |
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| Q |
106 |
atcatagatatcaggaagtttcctgcaatgcaacacataaataatgtttactccaaatgttacaaaaataaggcttttgaatagggactgcacatattga |
205 |
Q |
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| T |
49592473 |
atcatagatatcaggaagtttcctgcaatgcaacacataaataatgtttactccaaatgttacaaaaataaggcttttgaatagggactgcacatattga |
49592572 |
T |
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| Q |
206 |
taatttttataaggttaaaaatacaattaccaagtgattaatccagctgcattataccaaataaagagaatgagcataagggctatgaggatgtggcaca |
305 |
Q |
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| T |
49592573 |
taatttttataaggttaaaaatacaattaccaagtgattaatccagctgcattataccaaataaagagaatgagcataagggctatgaggatgtggcaca |
49592672 |
T |
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| Q |
306 |
gcagagtaacaagattatattcaaccacttcaaagagaaaccaaaccattgaaaatccagccacaattgctgcagatgatttcatgtctttccatagcaa |
405 |
Q |
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| T |
49592673 |
gcagagtaacaagattatattcaaccacttcaaagagaaaccaaaccattgaaaatccagccacaattgctgcagatgatttcatgtctttccatagcaa |
49592772 |
T |
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| Q |
406 |
gatatcagcaactgcaaaaccagaa |
430 |
Q |
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| T |
49592773 |
gatatcagcaactgcaaaaccagaa |
49592797 |
T |
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