View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_high_7 (Length: 422)
Name: NF20073_high_7
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 28396665 - 28396265
Alignment:
| Q |
18 |
gatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttatgtcagagctgtctggcctctccaatttgattgtctgtcaaacaattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28396665 |
gatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttatgtcagagctgtctggcctccccaatttgattgtctgtcaaacaattaa |
28396566 |
T |
|
| Q |
118 |
aaaatactcttccannnnnnnnattnnnnnnnn-ctcttgataataataataaatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaa |
216 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28396565 |
aaaatactcttccattttaaaaaaaaaaaaaaaactcttgataataataataaatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaa |
28396466 |
T |
|
| Q |
217 |
ctaagacggtcccttggttctgtagggtacagc-actatttctactaattnnnnnnn------------ttgctatatgaccttgttctactgcttctgc |
303 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
28396465 |
ctaggacggtcccttggttctgtagggtacagccactatttctactaattggggtggggggtgggggtgttgctatatggccttgttctactgcttctgc |
28396366 |
T |
|
| Q |
304 |
atgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataagaagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28396365 |
atgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataagaagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttc |
28396266 |
T |
|
| Q |
404 |
c |
404 |
Q |
| |
|
| |
|
|
| T |
28396265 |
c |
28396265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University