View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_low_1 (Length: 826)
Name: NF20073_low_1
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 818
Target Start/End: Complemental strand, 6593865 - 6593064
Alignment:
| Q |
18 |
ataccttctgcaacaggaaaccagtttgggtcctttgtcagttnnnnnnnccatttcatatagggtttccaattgagaggttgtttttgccacaacagag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6593865 |
ataccttctgcaacaggaaaccagtttgggtcctttgtcagttaaaaaaaccatttcatatagggtttccaattgagaggttgtttttgccacaacaaag |
6593766 |
T |
|
| Q |
118 |
ggatttttgacaaatctttattattgaacaattggtaatttggtataattttttatggttcnnnnnnnnnnnacaataaataactatctcatttcattaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6593765 |
ggatttttgacaaatctttattattgaacaattggtaatttggtataattttttatggttctttttttttttacaataaataactatctcatttcattaa |
6593666 |
T |
|
| Q |
218 |
gcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactctagcaagctatgaacctcatttgtttgtat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6593665 |
gcaataatagtttagatacaatcaggcatatcaatgaacaaatgaaaactaggttgagatgtggccactctagcaagccatgaacctcatttgtttgtat |
6593566 |
T |
|
| Q |
318 |
cataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttagattcattcttaagactact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6593565 |
cataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttagattcattcttaagactact |
6593466 |
T |
|
| Q |
418 |
atggaaactatcaactactactctctcgaagagtccaacttaaaagtcacattattaatatgcaaatccttcaaccatctgatagcgaacagta------ |
511 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593465 |
atggaaactatcaactact-----ctcgtagagtccaacttaaaagtcgcattattaatatgcaaatccttcaaccatctgatagcgaacagtagaccta |
6593371 |
T |
|
| Q |
512 |
aagcctctccttcatcaacttttaggatgggtgaaatccattccgtttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccacta |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6593370 |
aagcctctccttcatcaacttttaggatgggtgaaattcattccgtttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccacta |
6593271 |
T |
|
| Q |
612 |
tgttacttgacctagagaaaactgcatcgacattacacttgtagctcggtttcttccatatgtgattgacaacatgttgctgtgccgctgcattatttca |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
6593270 |
tgttacttgacctagagaaaactgcatcgacattacacttgtagctcggtttcttccatatgtgattgacaacttgttgctgtgccactgcattatttca |
6593171 |
T |
|
| Q |
712 |
gcatgtctgtgcgttatgccaactcgagagtagattcatactcctctcgccaacaacgtcttattgaagaggaattgtttatcctctaatcaactaaata |
811 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6593170 |
gcatgtctttgtgttatgccaactcgagagtagattcatactcctctcgccgacaacgtcttattgaagaggaattgtttatcctctaatcaactaaata |
6593071 |
T |
|
| Q |
812 |
gtattat |
818 |
Q |
| |
|
||||||| |
|
|
| T |
6593070 |
gtattat |
6593064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 190 - 436
Target Start/End: Original strand, 10980867 - 10981115
Alignment:
| Q |
190 |
acaataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactcta |
289 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| ||| | ||||||||||||| || | ||||||||| | ||| |
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|
| T |
10980867 |
acaataaataactatatcatttcatta-gcaataataggttcaatacaatcaggcatctcagtaaacaaatggaaactagataacgatgtggccgcccta |
10980965 |
T |
|
| Q |
290 |
gcaag-ctatg---aacctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagt |
385 |
Q |
| |
|
||||| ||||| ||||| |||||||||| || ||||||| || |||||| ||||| |||||||||| | || |||||||||||| ||||| |||| | |
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|
| T |
10980966 |
gcaagactatgagcaaccttatttgtttgtctcctaataaactc-aacctgcgagtttgtgaaaaaagatgagaatgaatttctacactctctaataatt |
10981064 |
T |
|
| Q |
386 |
gctccaagtttagattcattcttaagactactatggaaactatcaactact |
436 |
Q |
| |
|
||||||| | |||||||| ||| || | |||||||||||||||||||| |
|
|
| T |
10981065 |
gctccaaaatcagattcatctttacgattgttatggaaactatcaactact |
10981115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 449 - 658
Target Start/End: Complemental strand, 6904458 - 6904237
Alignment:
| Q |
449 |
agtccaacttaaaagtcacattattaatatgcaaatccttcaaccatctgatagcgaacag----------taaagcctctccttcatcaacttttagga |
538 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||||||||||||||||||||||||| | |||| |||| |||||| ||||||||||||||||| |
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|
| T |
6904458 |
agtctaactcaaaaatcacattactaatatgcaaatccttcaaccatctgataacaaacaaacagtaggcctaaatcctctcattcatcaacttttagga |
6904359 |
T |
|
| Q |
539 |
tgggtgaaatccattccg--tttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccactatgttacttgacctagagaaaactgc |
636 |
Q |
| |
|
||| |||| |||| | |||||||||||||||||||| | | || ||||||||||||| ||||||||||| | |||||||||| |||||| |||| |
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|
| T |
6904358 |
tggacaaaattcattatgcttttgctaaaacaaaacttccttaaacgcctctaatacacatttcaatccccactctactacttgacctggagaaagctgc |
6904259 |
T |
|
| Q |
637 |
atcgacattacacttgtagctc |
658 |
Q |
| |
|
||||| |||| ||| |||||| |
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|
| T |
6904258 |
atcgatgttacccttatagctc |
6904237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 6904680 - 6904580
Alignment:
| Q |
193 |
ataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactctagca |
292 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||| |||||||||| |||||| |||| ||||||| ||||| ||||| |
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|
| T |
6904680 |
ataaataactatctcatttgatta-gcaataatagtttggatacaatcgggcatataaatgaacaaacggaaactaggtagagatgtagccaccatagca |
6904582 |
T |
|
| Q |
293 |
ag |
294 |
Q |
| |
|
|| |
|
|
| T |
6904581 |
ag |
6904580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 747
Target Start/End: Original strand, 5444354 - 5444496
Alignment:
| Q |
617 |
cttgacctagagaaaactgcatcgacattacacttgtagctc---------ggtttcttccatatgtgattgacaac---atgttgctgtgccgctgcat |
704 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||| |||| |
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|
| T |
5444354 |
cttgacatggagaaagctgcatcgacattacacttgtagctccttgcattcggtttcttccatctgtgattgacaactttctgttgttgtttcgccgcat |
5444453 |
T |
|
| Q |
705 |
tatttcagcatgtctgtgcgttatgccaactcgagagtagatt |
747 |
Q |
| |
|
|||| | ||||| || |||||||||||||| ||||||||||| |
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|
| T |
5444454 |
tattgcgacatgtatgcgcgttatgccaacttgagagtagatt |
5444496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 747
Target Start/End: Original strand, 5453398 - 5453540
Alignment:
| Q |
617 |
cttgacctagagaaaactgcatcgacattacacttgtagctc---------ggtttcttccatatgtgattgacaac---atgttgctgtgccgctgcat |
704 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||| |||| |
|
|
| T |
5453398 |
cttgacatggagaaagctgcatcgacattacacttgtagctccttgcattcggtttcttccatctgtgattgacaactttctgttgttgtttcgccgcat |
5453497 |
T |
|
| Q |
705 |
tatttcagcatgtctgtgcgttatgccaactcgagagtagatt |
747 |
Q |
| |
|
|||| | ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
5453498 |
tattgcgacatgtatgcgcgttatgccaacttgagagtagatt |
5453540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 761
Target Start/End: Complemental strand, 6904214 - 6904165
Alignment:
| Q |
712 |
gcatgtctgtgcgttatgccaactcgagagtagattcatactcctctcgc |
761 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6904214 |
gcatgtctgcgcgttatgccaactcgagagtagattctaacccctctcgc |
6904165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 23223136 - 23223054
Alignment:
| Q |
199 |
aactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggcc |
283 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| ||| ||||||||| |||| |||||||||| |
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|
| T |
23223136 |
aactatctcatttcattat-caataagattttcgatacaatcaggcatctcaataaac-aatggaaactaggtaaagatgtggcc |
23223054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 23237217 - 23237134
Alignment:
| Q |
199 |
aactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggcc |
283 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| |||| ||||||| |||| |||||||||| |
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|
| T |
23237217 |
aactatctcatttcattat-caataagattttcgatacaatcaggcatctcaataaacagatggaaattaggtaaagatgtggcc |
23237134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 510 - 603
Target Start/End: Original strand, 15824570 - 15824665
Alignment:
| Q |
510 |
taaagcctctccttcatcaacttttaggatgggtgaaatccattccg--tttgctaaaacaaaacttccatgatcgtctctaatacacataccaat |
603 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||| || ||||| |||||||| || || || |||||||| |
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|
| T |
15824570 |
taaagcttctccttcatcaactttaaggatgggtgaaatccattttgtttttgctaaaacgaagcttccttgatcgtccctgatgcatataccaat |
15824665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 488
Target Start/End: Complemental strand, 6540622 - 6540440
Alignment:
| Q |
300 |
aacctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttaga |
399 |
Q |
| |
|
|||||||||| |||| || ||||||| |||| ||| |||||||||||||| | || || |||||||||||| ||||| |||| |||||||| | || |
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|
| T |
6540622 |
aacctcatttacttgtctcctaataaactcaa-cctacaagtttttgaaaaatgtcgagaatgaatttctacactctctaataatagctccaagctccga |
6540524 |
T |
|
| Q |
400 |
ttcattcttaagactactatggaaactatcaactactactctctcgaagagtccaacttaaaagtcacattattaatatgcaaatcctt |
488 |
Q |
| |
|
||||| | || |||||||||| |||| |||||| ||| |||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
6540523 |
ttcatctctgcgattactatggaagctattgactact-----ctcttagagtctaactcaaaagtcccattattaatatgcaaatcctt |
6540440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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