View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20073_low_10 (Length: 390)

Name: NF20073_low_10
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20073_low_10
NF20073_low_10
[»] scaffold0110 (4 HSPs)
scaffold0110 (172-344)||(27480-27650)
scaffold0110 (1-141)||(27651-27791)
scaffold0110 (257-344)||(12044-12135)
scaffold0110 (257-344)||(19781-19872)
[»] chr1 (1 HSPs)
chr1 (115-163)||(7267900-7267948)
[»] chr5 (3 HSPs)
chr5 (118-172)||(13538265-13538319)
chr5 (118-163)||(13542882-13542927)
chr5 (43-97)||(24406634-24406690)
[»] chr4 (2 HSPs)
chr4 (49-163)||(24870601-24870718)
chr4 (124-164)||(13632093-13632133)
[»] chr8 (1 HSPs)
chr8 (118-163)||(11021341-11021386)
[»] chr7 (3 HSPs)
chr7 (119-164)||(41780267-41780311)
chr7 (124-164)||(33228703-33228743)
chr7 (119-163)||(46734196-46734240)
[»] chr3 (3 HSPs)
chr3 (119-164)||(11029667-11029712)
chr3 (116-145)||(32181241-32181270)
chr3 (118-163)||(54923490-54923535)
[»] chr2 (1 HSPs)
chr2 (73-144)||(32517851-32517923)


Alignment Details
Target: scaffold0110 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 172 - 344
Target Start/End: Complemental strand, 27650 - 27480
Alignment:
Q  172 aaacaagattttcttacttccaacaaaaacacactttctagtatgttctttctttatcaacaaaaacactattaatttttggctgattaagaataattaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  27650 aaacaagattttcttacttccaacaaaaacacactttctagaatgttctttatttatcaacaaaaacact--taatttttggctgattaagaataattaa 27553  T
Q  272 ttgagattaggtaagaaacacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctt 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27552 ttgagattaggtaagaaacacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctt 27480  T

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Target: scaffold0110; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27791 - 27651
Alignment:
Q  1 tgcattttcctaaaataatttcatcaaaacaagannnnnnnnagattgacgagatggcaaagccctcgtaaacacacgcacaaagtggaggtaccagttt 100  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27791 tgcattttcctaaaataatttcatcaaaacaagattttttttagattgacgagatggcaaagccctcgtaaacacacgcacaaagtggaggtaccagttt 27692  T
Q  101 cgaacgtcgaacacgatgtccaacctaacaatttcgacatt 141  Q
    ||||| |||  ||||||||||||||||||||||||||||||    
T  27691 cgaacctcggtcacgatgtccaacctaacaatttcgacatt 27651  T

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Target: scaffold0110; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 12135 - 12044
Alignment:
Q  257 attaagaataattaattgagattag----gtaagaaacacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctt 344  Q
    |||||||||||||||||||||||||    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12135 attaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctt 12044  T

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Target: scaffold0110; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 19872 - 19781
Alignment:
Q  257 attaagaataattaattgagattag----gtaagaaacacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctt 344  Q
    |||||||||||||||||||||||||    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19872 attaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaatactagggccacgaccctctt 19781  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 7267900 - 7267948
Alignment:
Q  115 gatgtccaacctaacaatttcgacatttttgcaagttaagttaggactt 163  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  7267900 gatgtccaaactaacaatttcgacatttttgtaagttgagttaggactt 7267948  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 13538265 - 13538319
Alignment:
Q  118 gtccaacctaacaatttcgacatttttgcaagttaagttaggacttccgggacaa 172  Q
    ||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||||    
T  13538265 gtccagcctaacaatttcgatatttttgtaagttgagttaggacttatgggacaa 13538319  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 13542882 - 13542927
Alignment:
Q  118 gtccaacctaacaatttcgacatttttgcaagttaagttaggactt 163  Q
    ||||||||||||||||| |||||||||  ||||| |||||||||||    
T  13542882 gtccaacctaacaattttgacatttttttaagttgagttaggactt 13542927  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 24406690 - 24406634
Alignment:
Q  43 agattgacgagatggcaaagccctcgtaaaca--cacgcacaaagtggaggtaccag 97  Q
    |||| ||||||||||||||||| || ||||||  ||| |||||||||||||||||||    
T  24406690 agatagacgagatggcaaagccatcataaacatacacacacaaagtggaggtaccag 24406634  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 24870718 - 24870601
Alignment:
Q  49 acgagatggcaaagccctcgtaaacacacgcac--aaagtggaggtacc-agtttcgaacgtcgaacacgatgtccaacctaacaatttcgacatttttg 145  Q
    |||||||||||||||| || ||||| ||| |||  |||||||||||||| || ||||||| |||  ||  | ||||  ||||||||||||| ||||||||    
T  24870718 acgagatggcaaagccatcataaactcacacacgtaaagtggaggtaccgaggttcgaacctcggtcattacgtccggcctaacaatttcggcatttttg 24870619  T
Q  146 caagttaagttaggactt 163  Q
    | |||| || ||||||||    
T  24870618 ccagttgagctaggactt 24870601  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 13632133 - 13632093
Alignment:
Q  124 cctaacaatttcgacatttttgcaagttaagttaggacttc 164  Q
    ||||||||||||||||||||||| |||| || |||||||||    
T  13632133 cctaacaatttcgacatttttgccagttgagctaggacttc 13632093  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 11021386 - 11021341
Alignment:
Q  118 gtccaacctaacaatttcgacatttttgcaagttaagttaggactt 163  Q
    |||| |||||| ||||||||||||||||| |||| |||||||||||    
T  11021386 gtccgacctaataatttcgacatttttgctagttgagttaggactt 11021341  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 41780311 - 41780267
Alignment:
Q  119 tccaacctaacaatttcgacatttttgcaagttaagttaggacttc 164  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||    
T  41780311 tccaacctaacaatttcgaca-ttttgctagttgagttaggacttc 41780267  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 33228743 - 33228703
Alignment:
Q  124 cctaacaatttcgacatttttgcaagttaagttaggacttc 164  Q
    ||||||||||||||||||||||| |||| || |||||||||    
T  33228743 cctaacaatttcgacatttttgccagttgagctaggacttc 33228703  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 46734196 - 46734240
Alignment:
Q  119 tccaacctaacaatttcgacatttttgcaagttaagttaggactt 163  Q
    |||| ||||||||||||||||||||||| | || |||||||||||    
T  46734196 tccagcctaacaatttcgacatttttgccaattgagttaggactt 46734240  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 11029712 - 11029667
Alignment:
Q  119 tccaacctaacaatttcgacatttttgcaagttaagttaggacttc 164  Q
    |||| ||||||||||||||||||||||| |||| || |||||||||    
T  11029712 tccagcctaacaatttcgacatttttgccagttgagctaggacttc 11029667  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 32181270 - 32181241
Alignment:
Q  116 atgtccaacctaacaatttcgacatttttg 145  Q
    ||||||||||||||||||||||||||||||    
T  32181270 atgtccaacctaacaatttcgacatttttg 32181241  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 54923535 - 54923490
Alignment:
Q  118 gtccaacctaacaatttcgacatttttgcaagttaagttaggactt 163  Q
    |||| |||||||||||||||||||||| | |||| |||||||||||    
T  54923535 gtccgacctaacaatttcgacatttttaccagttgagttaggactt 54923490  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 32517851 - 32517923
Alignment:
Q  73 cacacgcacaaagtggaggtaccagt-ttcgaacgtcgaacacgatgtccaacctaacaatttcgacattttt 144  Q
    ||||| ||||||||||||||||| |  ||||||| |||  || || ||||| |||||||||||||||||||||    
T  32517851 cacacacacaaagtggaggtaccggggttcgaacctcggtcatgacgtccagcctaacaatttcgacattttt 32517923  T

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