View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_low_11 (Length: 379)
Name: NF20073_low_11
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 31050430 - 31050765
Alignment:
| Q |
12 |
cgaagaatatggcgttatatgatgagtaggtacccaacaaacgtccagatacaggttcagaagtgttcttaattgttatcttttctccaacacactccac |
111 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31050430 |
cgaataatatgacgttatatgatgagtaggtacccaacaaacgtccagatacaggttcagaagtgttcttaattgttatcttttctccaacacactccac |
31050529 |
T |
|
| Q |
112 |
tattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaataattgaaagattccgaaaataaaattaactgtaataaatat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
31050530 |
tattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaataattgaaagattcctaaaataaa----------------at |
31050613 |
T |
|
| Q |
212 |
acacaaattatttgaaagataat-nnnnnnnncttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccacc |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31050614 |
acacaaattatttgaaagataataaaaaaaaacttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccacc |
31050713 |
T |
|
| Q |
311 |
agagtgaaagactggttaggtggcaagtttacaaaaaggctggctccctagt |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31050714 |
agagtgaaagactggttaggtggtaagtttacaaaaaggctggctccctagt |
31050765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 31063105 - 31063222
Alignment:
| Q |
243 |
cttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaagactggttaggtggcaagtttac |
342 |
Q |
| |
|
|||||||||| | ||||||||||||| | |||| |||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||| |
|
|
| T |
31063105 |
cttttggaatttacacttacgcatctcgggttgtggcattggaaaatttagcatcaatagaattcactagagtaaaagactggttaggtggtaagtctac |
31063204 |
T |
|
| Q |
343 |
aaaaaggctggctcccta |
360 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
31063205 |
aaaaagactggctcccta |
31063222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 31108173 - 31108289
Alignment:
| Q |
243 |
cttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaagactggttaggtggcaagtttac |
342 |
Q |
| |
|
|||||||| | | ||||||||||||| ||||||| ||||||| |||||||||||| ||||| ||| | ||| || ||||||||||||||||||||| |
|
|
| T |
31108173 |
cttttggagtttacacttacgcatctcgatttgttgcattggccaatttagcatcagtagaagtcactatagtaaagtcctggttaggtggcaagtttac |
31108272 |
T |
|
| Q |
343 |
aaaaaggctggctccct |
359 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
31108273 |
aaaaagactggctccct |
31108289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 360
Target Start/End: Complemental strand, 31202157 - 31202054
Alignment:
| Q |
257 |
acttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaagactggttaggtggcaagtttacaaaaaggctggctc |
356 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | |||| ||||| ||||| | | ||||| || | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31202157 |
acttacgcatcatgatttgtcgcattggccagtttaccatcagtagaaacaatcagaggaaatgcctggttaggtggcaagtttacaaaaagactggctc |
31202058 |
T |
|
| Q |
357 |
ccta |
360 |
Q |
| |
|
|||| |
|
|
| T |
31202057 |
ccta |
31202054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 31107912 - 31107973
Alignment:
| Q |
108 |
ccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa |
169 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
31107912 |
ccactattttaccattcacttttgaaggatcaagtgttcttggtctacaaaatcgactgcaa |
31107973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 31145507 - 31145574
Alignment:
| Q |
102 |
cacactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa |
169 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
31145507 |
cacacgccactactttaccattcacttttgaaggatcaagcgttcctggtctacaaaattgactgcaa |
31145574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 31145928 - 31146034
Alignment:
| Q |
256 |
cacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaagact-ggttaggtggcaagtttacaaaaaggctggc |
354 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| ||||| | | | ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
31145928 |
cacttacgcatctacatctgtcacattggcaaatttagcatcagtagaaattattataa-gaaagtcttggttaggtggcaagtttacaaaaagactggc |
31146026 |
T |
|
| Q |
355 |
tccctagt |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
31146027 |
tccctagt |
31146034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 31163331 - 31163398
Alignment:
| Q |
102 |
cacactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa |
169 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||| |||||||| |
|
|
| T |
31163331 |
cacacgccactactttaccattcacttttgaaggatcaagcgttcctggtctacaaaattgactgcaa |
31163398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 31163752 - 31163858
Alignment:
| Q |
256 |
cacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaagact-ggttaggtggcaagtttacaaaaaggctggc |
354 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| ||||| | | | ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
31163752 |
cacttacgcatctacatctgtcacattggcaaatttagcatcagtagaaattattataa-gaaagtcttggttaggtggcaagtttacaaaaagactggc |
31163850 |
T |
|
| Q |
355 |
tccctagt |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
31163851 |
tccctagt |
31163858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 31062937 - 31062998
Alignment:
| Q |
108 |
ccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
31062937 |
ccactattttacccttcacttttgaaggatcaagtgttcttggtctacaaaaccgactgcaa |
31062998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 31202309 - 31202253
Alignment:
| Q |
104 |
cactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaat |
160 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
31202309 |
cactccactattttccccttcacttttgaaggatcaagtgttcctggcttacaaaat |
31202253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University