View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_low_13 (Length: 331)
Name: NF20073_low_13
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_13 |
 | |
|
| [»] scaffold0147 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 1763375 - 1763076
Alignment:
| Q |
18 |
aagatcaccttcaattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1763375 |
aagatcaccttcaattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccat |
1763276 |
T |
|
| Q |
118 |
gcactccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcat |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1763275 |
gcactccatttgcaaatctttccggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcat |
1763176 |
T |
|
| Q |
218 |
tccttttggaatttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1763175 |
tccttttggaatttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcacc |
1763076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 246
Target Start/End: Complemental strand, 25197782 - 25197611
Alignment:
| Q |
75 |
attccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagct |
174 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||| | |||| |||| ||||||| ||||||||| || ||||| | |||||||| ||||| | | |
|
|
| T |
25197782 |
attccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcgaccccccatatat |
25197683 |
T |
|
| Q |
175 |
ctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaat |
246 |
Q |
| |
|
| ||||| || ||||| || |||||||| |||| | | |||||||||||||||| ||||||||| |||| |
|
|
| T |
25197682 |
ccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaat |
25197611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 10627 - 10409
Alignment:
| Q |
23 |
caccttcaattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcact |
122 |
Q |
| |
|
|||||||||||| | ||| | || |||||||||| ||| ||||||| || |||||||||||||| ||| |||||||||||||||| |||| | |||| |
|
|
| T |
10627 |
caccttcaattctatcatggataaatgctgtcctggacagacacgagaaccgattccaaatggcatataagcttgtggaatcttgcaggctctaagcaca |
10528 |
T |
|
| Q |
123 |
ccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattcctt |
222 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| ||||||| || ||| || ||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
10527 |
ccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatgtcatgctgcaatattgggattggaatctgaatattcattcctt |
10428 |
T |
|
| Q |
223 |
ttggaatttggataccttt |
241 |
Q |
| |
|
|||||| || ||||||||| |
|
|
| T |
10427 |
ttggaactttgataccttt |
10409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 10369 - 10333
Alignment:
| Q |
281 |
tgctggtggataaagcctcaatgtctcttgaatcacc |
317 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
10369 |
tgctggcggataaagcctcaaagtctcttgaatcacc |
10333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 19208315 - 19208135
Alignment:
| Q |
75 |
attccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagct |
174 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||| | ||||| | | |
|
|
| T |
19208315 |
attccaaatggcatataagcttgtggaatcttgcaggctccaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgggcccccagatat |
19208216 |
T |
|
| Q |
175 |
ctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaattaatgtctt |
255 |
Q |
| |
|
| |||||| |||||||| | |||||||| || | ||| ||||||||||||| || ||||||||| |||||||| |||| |
|
|
| T |
19208215 |
caatgtcttgttgcaatatcgcaattggaatctgcatattaattccttttggaactttgataccttttaaattaatatctt |
19208135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 19208109 - 19208073
Alignment:
| Q |
281 |
tgctggtggataaagcctcaatgtctcttgaatcacc |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19208109 |
tgctggtggataaagcctcaaagtctcttgaatcacc |
19208073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University