View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20073_low_18 (Length: 240)
Name: NF20073_low_18
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27714468 - 27714245
Alignment:
| Q |
1 |
atcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27714468 |
atcaaaaccttaagataccaccttaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgc |
27714369 |
T |
|
| Q |
101 |
ttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27714368 |
ttgcaaacaagcctacaactaggtggatacacaaaataatggaagaaaaaaacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgt |
27714269 |
T |
|
| Q |
201 |
tacttgtcccacaattgcccatga |
224 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
27714268 |
tacttatcccacaattgcccatga |
27714245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 27697690 - 27697853
Alignment:
| Q |
46 |
aaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaag |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||| | |||||||| |
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| T |
27697690 |
aaacttcccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgcttgcaaacaaacctgcaactagttggatacacaagaaaatggaag |
27697789 |
T |
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| Q |
146 |
nnnnnnncacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcc |
209 |
Q |
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||| |||||||||||||| || |||||||||||| |||||||||| ||||||||||| |
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| T |
27697790 |
aattgaacactgaaatagcatgtattcgtctaggaaatgtcaatgttatccctgttacttgtcc |
27697853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27747305 - 27747086
Alignment:
| Q |
1 |
atcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgc |
100 |
Q |
| |
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||||||||| ||||||||||| || || |||||||||||| ||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||| |
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| T |
27747305 |
atcaaaaccataagataccacttagttgagaaccctaaaaaagccaaacttccacccggtcccaaaccatggcctatcgttggtaatattcctgaaatgc |
27747206 |
T |
|
| Q |
101 |
ttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgt |
200 |
Q |
| |
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||||||| || ||| | |||| |||||||||||| |||||||||| ||| ||| |||| ||||||||||||||||||||||||||||| || || |
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| T |
27747205 |
ttgcaaataaacctgctactaggtggatacacaagataatggaagaattgaacactgaagtagcgtgtatccgcctaggaaatgtccatgttattcctgt |
27747106 |
T |
|
| Q |
201 |
tacttgtcccacaattgccc |
220 |
Q |
| |
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||| |||||||| ||||||| |
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| T |
27747105 |
tacctgtcccaccattgccc |
27747086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27727703 - 27727486
Alignment:
| Q |
1 |
atcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgc |
100 |
Q |
| |
|
|||||| || ||||||||||| ||| | |||||||| |||| |||||||| |||||||||||||||||||||||| |||| || |||||||||||| |
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| T |
27727703 |
atcaaatccataagataccacttaattaagaaccctaacaaaccaaaacttccaccaggtcccaaaccatggcctatacttggtaacattcctgaaatgc |
27727604 |
T |
|
| Q |
101 |
ttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgt |
200 |
Q |
| |
|
|||||||||| ||| |||||| |||||| ||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| || || |
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| T |
27727603 |
ttgcaaacaaacctgcaactaggtggat--acaaaatgatggaagaaatgaacaccgaaatagcgtgtatccgcctaggaaatgtccatgttattcctgt |
27727506 |
T |
|
| Q |
201 |
tacttgtcccacaattgccc |
220 |
Q |
| |
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||| |||||||| ||||||| |
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| T |
27727505 |
tacctgtcccaccattgccc |
27727486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 26408685 - 26408827
Alignment:
| Q |
52 |
cccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnn |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||| || ||| ||||||| |||| | ||||||| |
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| T |
26408685 |
cccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgattgcaaataatcctgcacctatgtggatattcaaagtgatggaagatttga |
26408784 |
T |
|
| Q |
152 |
ncacagaaatagcatgtatccgcctaggaaatgtccatgttat |
194 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
26408785 |
acaccgaaatagcatgtatccgtctaggaaatgtccatattat |
26408827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 32347607 - 32347570
Alignment:
| Q |
70 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
107 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
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| T |
32347607 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32347570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 32364269 - 32364232
Alignment:
| Q |
70 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
107 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||| |
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| T |
32364269 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32364232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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