View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20073_low_20 (Length: 235)
Name: NF20073_low_20
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28198859 - 28198975
Alignment:
| Q |
1 |
cacggcgagaacaaccaggtcacataataaactctcatgcagaagtgaactccaacataactttctactatagaagtccatagatgtacgactcaaataa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28198859 |
cacggcaagaacaaccaggtcacataataaactcccatgcagaagtgaactccaacataactttctactatagaagtccatagatgtacgactcaaataa |
28198958 |
T |
|
| Q |
101 |
atacaaaacaatttgca |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28198959 |
atacaaaacaatttgca |
28198975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 28199004 - 28199114
Alignment:
| Q |
111 |
atttgcattacacattttcacaatttaattacaaaattgtcatcttgttttcaatttgtttgcagtacaaataattgaaaactgaaaattaaatgtaaac |
210 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28199004 |
attttcattacgcattttcacaatttaattacaaaattgtcatctt-ttttcaatttgtttgcagtacaaataattgaaaacggaaaattaaatgtaaac |
28199102 |
T |
|
| Q |
211 |
aaggtggaagtt |
222 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
28199103 |
aaggtgaaagtt |
28199114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 7485377 - 7485455
Alignment:
| Q |
134 |
tttaattacaaaattgtcatcttgttttcaatttgtttgcagtacaaataattgaaaactgaaaattaaatgtaaacaag |
213 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | | | |||||| |||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
7485377 |
tttaattacaaaattgccatctcgtttttactatttttgca-tacaaatatttgaaaactgaaaatagaatgaaaacaag |
7485455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 17124347 - 17124379
Alignment:
| Q |
134 |
tttaattacaaaattgtcatcttgttttcaatt |
166 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
17124347 |
tttaattacaaaattgttatcttgttttcaatt |
17124379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University