View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20073_low_3 (Length: 560)
Name: NF20073_low_3
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 545
Target Start/End: Original strand, 7834039 - 7834565
Alignment:
| Q |
19 |
gatatggtatccagaattgatactaccgacttgatttctcttcatgtccttgattggcttatgaaactatcaatttcgtgctcgacaaccgcctcacatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7834039 |
gatatggtatccagaattgatactaccgacttgatttctcttcatgtccttgattggcttatgaaactatcaatttcgtcctcgacaaccgcctcacatg |
7834138 |
T |
|
| Q |
119 |
gatactaaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7834139 |
gatactaaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatga |
7834238 |
T |
|
| Q |
219 |
ggtatgataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagaggtttgtgtctctactgggctggagaga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7834239 |
ggtatgataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagaggtttgtgtctctactgagctggagaga |
7834338 |
T |
|
| Q |
319 |
cactagaggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccaattagagttgtggttttggtgataggtttgtat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
7834339 |
cactagaggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccatttagagttgtggttttagtgacaggtttgtat |
7834438 |
T |
|
| Q |
419 |
aatttgagacatccaaagtttaggaacaaactaccttatgtatcgagtaataagaggctccctgttagaacagatagtttaccgtgaatctgttttacaa |
518 |
Q |
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| T |
7834439 |
aatttgagacatccaaagtttaggaacaaactaccttctgtatcgagtaataagaggctccctgttagaacagatagtttaccgtgaatctgttttacaa |
7834538 |
T |
|
| Q |
519 |
ataataatatcatttcagtgatctgtg |
545 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
7834539 |
ataataatatcatttcagtgatctgtg |
7834565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 545
Target Start/End: Complemental strand, 7915262 - 7914726
Alignment:
| Q |
21 |
tatggtatccagaattgatactaccgacttgatttctcttcatgtccttgattggcttatgaaactatcaatttcgtgctcgacaaccgcctcacatgga |
120 |
Q |
| |
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||||||||||||||||||||||||| || || ||||||| ||||| ||||||||||||||| ||||||| |||||| | ||||||| ||||||||||| |
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| T |
7915262 |
tatggtatccagaattgatactaccaacatgttttctctacatgttcttgattggcttatggaactatcggtttcgtccgagacaaccacctcacatgga |
7915163 |
T |
|
| Q |
121 |
tactaaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatgagg |
220 |
Q |
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|||||||||||||| ||| || |||||||||| ||||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
7915162 |
tactaaactctcatgggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttccaacatcaaggtcacatgatgcagtgagaatgagg |
7915063 |
T |
|
| Q |
221 |
tatgataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagaggtttgtgtctctactgggctggagagaca |
320 |
Q |
| |
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|| ||||| || ||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
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| T |
7915062 |
tacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagagacc |
7914963 |
T |
|
| Q |
321 |
ctagaggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccaattagagttgtggttttggtgataggtttgtataa |
420 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
7914962 |
ctagaggaactacactgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacaccatttagagttgtggttttggtgacaggtttgtataa |
7914863 |
T |
|
| Q |
421 |
tttgagacatccaaagtttaggaacaaactaccttatgtatcgagtaat------aagaggctccctgttagaacagatagtttaccgtgaatc---tgt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||| || |||| ||| |
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| T |
7914862 |
tttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaacagatagtttactgtaaatctgttgt |
7914763 |
T |
|
| Q |
512 |
tttaca---aataataatatcatttcagtgatctgtg |
545 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |
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| T |
7914762 |
tttacaaataataataatatcatttcaatgatctgtg |
7914726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 7880420 - 7880221
Alignment:
| Q |
56 |
ctcttcatgtccttgattggcttatgaaactatcaatttcgtgctcgacaaccgcctcacatggatactaaactctcatcggctgaatctgttcatcatg |
155 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||| | |||||||| ||||| || |
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| T |
7880420 |
ctctgcatgttcttgactggcttatggaactatcggtttcgtctgagacaaccgcctcacatggata-taaactctcatggcctgaatctagtcatcctg |
7880322 |
T |
|
| Q |
156 |
atgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatgaggtatgataggctaagaactgttgcaggtaggattca |
255 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||| ||||||| ||||||||| |
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| T |
7880321 |
atgaacttgacgaagagtttgacacatttccaacatcaagatcacatgatgcagtgagaatgaggtatgatagacttaaaaccgttgcagataggattca |
7880222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 7832999 - 7832794
Alignment:
| Q |
25 |
gtatccagaattgatactaccgacttgat-ttctcttcatgtccttgattggcttatgaaactatcaatttcgtgctcgacaaccgcctcacatggatac |
123 |
Q |
| |
|
|||||| |||||||||||||| |||| | |||||| || || ||| ||||||||||| ||||||| ||| || ||| |||| | | | ||||||| || |
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|
| T |
7832999 |
gtatcctgaattgatactaccaactttttcttctctacaagttcttcattggcttatggaactatcggttttgtcctccacaatcactttacatggagac |
7832900 |
T |
|
| Q |
124 |
taaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatgaggtat |
223 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
7832899 |
taaactctcatgggctgaatatgttcatcctgatgaacttgataaagtgtttgacacatttccaacatcaagatcacatgatatggtgagaatgaggtat |
7832800 |
T |
|
| Q |
224 |
gatagg |
229 |
Q |
| |
|
|||||| |
|
|
| T |
7832799 |
gatagg |
7832794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 434
Target Start/End: Complemental strand, 7880209 - 7880109
Alignment:
| Q |
334 |
actgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccaattagagttgtggttttggtgataggtttgtataatttgagacatcca |
433 |
Q |
| |
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||||||| |||||||||| ||||||| || |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
7880209 |
actgtttgtgttgtttagtctttgtgaagttgtgattttctatgcaactccatttagagttgtggttttggtgacaggtttgtataatttaagacatcca |
7880110 |
T |
|
| Q |
434 |
a |
434 |
Q |
| |
|
| |
|
|
| T |
7880109 |
a |
7880109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 469
Target Start/End: Complemental strand, 7832708 - 7832635
Alignment:
| Q |
396 |
tggttttggtgataggtttgtataatttgagacatccaaagtttaggaacaaactaccttatgtatcgagtaat |
469 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||| | | |||||||||||||||||||| |||| | |||||| |
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|
| T |
7832708 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaat |
7832635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 8415696 - 8415336
Alignment:
| Q |
25 |
gtatccagaattgatactaccgacttgatttctcttcatgtccttgattggcttatgaaactatcaatttcgtgctcgacaaccgcctcacatggatact |
124 |
Q |
| |
|
||||||||||||||| || |||||| |||||||| ||||| ||| ||||| ||||| ||||||| ||||||| | || | || ||||||||||||||| |
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|
| T |
8415696 |
gtatccagaattgattcttccgactatatttctctacatgttcttaattggtttatggaactatcgatttcgtccaagaaatccacctcacatggatact |
8415597 |
T |
|
| Q |
125 |
aaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatgaggtatg |
224 |
Q |
| |
|
|||||||||| ||| ||| | | ||| || ||||| |||| ||||||||| |||||||||| || | | | ||||||| |||||||||||||||| |
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|
| T |
8415596 |
aaactctcatgggccgaaggagctaatccagacgaactcgatgaagagtttgatacatttccaagttctaaacctcatgatgtggtgagaatgaggtatg |
8415497 |
T |
|
| Q |
225 |
ataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagaggtttgtgtctctactgggctggagagacactag |
324 |
Q |
| |
|
||||||| |||| |||||| || ||||||||| | ||||||| |||||||||| |||||| ||||||||| ||||||||| |||||||||| || || |
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|
| T |
8415496 |
ataggcttagaagtgttgcgggaaggattcaaacggttgttggagacatagctacacaaggagagaggtttcattctctactgagctggagagatacaag |
8415397 |
T |
|
| Q |
325 |
aggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacacca |
385 |
Q |
| |
|
|| ||||| || ||||| |||| ||| | ||| | || || ||| |||||||||||||| |
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|
| T |
8415396 |
agcaactagtctctttatagtgttcagcttgtgttctgcagttattctctatgcaacacca |
8415336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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