View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20073_low_4 (Length: 509)
Name: NF20073_low_4
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20073_low_4 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 9696217 - 9695905
Alignment:
| Q |
19 |
gatgcaacatacaacatagcttcacgtgaataacagcattcaattggtagaagataatcaaaagaatgtaccataacaaactaagtctgtattaataata |
118 |
Q |
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| T |
9696217 |
gatgcaacatataacataacttcac-tgaataacagcattcaattggtagaagataatcaacagaatgtaccataacaaactgagtctgtattaataata |
9696119 |
T |
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| Q |
119 |
aaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgctaatataaacctaaaaactgtttgttcatcaaaaaacagctttgga |
218 |
Q |
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| T |
9696118 |
aaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgctaatataaacctaacaactgtttgttcatcgcaaaacagctttgga |
9696019 |
T |
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| Q |
219 |
tctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgcagttactcctacgcttcttccttcagcaccaccaactttactcc |
318 |
Q |
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| T |
9696018 |
tctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgcagttaatcctacgcttcttccttcagcaccaccaaccttactcc |
9695919 |
T |
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| Q |
319 |
tcatcctcctcctg |
332 |
Q |
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| T |
9695918 |
tcatcctcctcctg |
9695905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 9695791 - 9695742
Alignment:
| Q |
446 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
495 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
9695742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 495
Target Start/End: Original strand, 14700 - 14748
Alignment:
| Q |
447 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
495 |
Q |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctca |
14748 |
T |
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