View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20073_low_6 (Length: 431)

Name: NF20073_low_6
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20073_low_6
NF20073_low_6
[»] chr4 (5 HSPs)
chr4 (10-415)||(4332552-4332957)
chr4 (23-308)||(4323640-4323925)
chr4 (25-164)||(4350370-4350509)
chr4 (119-310)||(4356760-4356951)
chr4 (161-310)||(4129500-4129649)
[»] chr6 (4 HSPs)
chr6 (123-280)||(5422244-5422401)
chr6 (321-409)||(5174055-5174143)
chr6 (248-386)||(5358165-5358303)
chr6 (119-196)||(5340679-5340756)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 4332957 - 4332552
Alignment:
Q  10 gcagagagagaagtaacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332957 gcagagagagaagtaacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccac 4332858  T
Q  110 ttttaaaactctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtacc 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332857 ttttaaaactctgttcaaaagattttgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtacc 4332758  T
Q  210 acctgtcttgtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332757 acctgtcttgtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattc 4332658  T
Q  310 tcgactcctggattgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagaga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332657 tcgactcctggattgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagaga 4332558  T
Q  410 tgtaga 415  Q
    ||||||    
T  4332557 tgtaga 4332552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 4323640 - 4323925
Alignment:
Q  23 taacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctg 122  Q
    ||||||||||||||| ||||||||||| |||| |||||| |||  ||||||| | | |||||||| |  | ||||  |||  ||| | | | ||| ||||    
T  4323640 taacctggaatttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctg 4323739  T
Q  123 ttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtgg 222  Q
    ||||| |||||| |||| | ||||||||| ||||| ||||||  ||||||||| || ||||  ||||||||||||||||||||||| ||||| | |||||    
T  4323740 ttcaatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggcagtacaacctggcctgtgg 4323839  T
Q  223 ttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaatt 308  Q
    ||||   || | |||| ||||||  |||||||||||||||||| |  ||||| ||||||||||| |||||||| | ||||||||||    
T  4323840 ttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgagaagactataacagaaatt 4323925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 4350509 - 4350370
Alignment:
Q  25 acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt 124  Q
    |||||||||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||  ||||||||||| ||||    
T  4350509 acctggaattcaggacaacaaatcctgcaaggccagcagcatcacgaagtgcgtctctccactttggtaccatgaattcatctccttttaaaactttgtt 4350410  T
Q  125 caaaagatttcgaaaagctttaccaaagtcacctgtttga 164  Q
    |||    ||| ||||||||| |||||| ||||||||||||    
T  4350409 caatgctttttgaaaagcttcaccaaactcacctgtttga 4350370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 310
Target Start/End: Complemental strand, 4356951 - 4356760
Alignment:
Q  119 tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtctt 218  Q
    |||||||||||||||| |||| | ||||||||||||||| ||||||| ||||||||| || || |  ||||| |||||||| ||||||||||| || | |    
T  4356951 tctgttcaaaagattttgaaatgatttaccaaagtcaccggtttgacgacgaacttcggaagggtcaacatcatagaacactggcagtaccacttggcct 4356852  T
Q  219 gtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattct 310  Q
     | || ||  |||||  ||| ||||| | ||||||| | |||||||||  ||||||||| ||||||||||||||||| | ||||| ||||||    
T  4356851 atagtactgtaacacgacattatttgaaccaactctcgcagacaccatgacgaatcagcatagtttttggagaagacgataacagcaattct 4356760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 310
Target Start/End: Original strand, 4129500 - 4129649
Alignment:
Q  161 ttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggttctaaaacactccataatttgcatcaactcttgaaga 260  Q
    ||||| |||||| || || ||||  |||||||||||||||||||||||||||||||  ||||||||  |||||||||  ||||| |||||||| || | |    
T  4129500 ttgacgacgaacatcagacggataaacatcgtagaacacaggcagtaccacctgtccagtggttctgtaacactccagtatttgaatcaactcctgcata 4129599  T
Q  261 caccattgcgaatcagcgtagtttttggagaagacaacaacagaaattct 310  Q
    |||||  | ||||| ||||||||||||||||| |||| || |||||||||    
T  4129600 caccacggtgaatccgcgtagtttttggagaatacaataatagaaattct 4129649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 5422401 - 5422244
Alignment:
Q  123 ttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtgg 222  Q
    |||||||||||| |||| ||||| ||||| ||||| ||||||| ||| ||||| || |||| ||| ||| ||||||| ||||| || |  ||||   |||    
T  5422401 ttcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttgtccaatgg 5422302  T
Q  223 ttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgta 280  Q
    ||||   ||||||||| |||| || |||||| | |||||||||||| ||||| |||||    
T  5422301 ttctgtgacactccattattttcaacaactcatcaagacaccattgtgaatccgcgta 5422244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 5174143 - 5174055
Alignment:
Q  321 attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagaga 409  Q
    |||||||||||||||| ||| || ||| ||| ||| |||||||| |||| ||||||||| |||||| ||||||||  | ||||||||||    
T  5174143 attgcttgtagtagtgattttgaaatgtgatctcctctttgaagtgaatcatcgtccttaaaaacgctaattccattgttttgaagaga 5174055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 5358165 - 5358303
Alignment:
Q  248 caactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggattgcttgtagtagtgttttagagatg 347  Q
    |||||||| ||||||||||||||| || || || ||| | ||||| || | ||||||||||   || || || |||||||| | ||||| ||| || |||    
T  5358165 caactcttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaatttgagaatcttgaattgcttgcattagtgattttgaaatg 5358264  T
Q  348 cgatgtcccctttgaagggaatgatcgtccttgaaaacg 386  Q
     ||| |||||||||||| |||||||| ||||| ||||||    
T  5358265 tgatctcccctttgaagtgaatgatcatccttaaaaacg 5358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 5340756 - 5340679
Alignment:
Q  119 tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaa 196  Q
    |||||||||||||||| |||| ||||| ||||| || |||||||||  ||| | ||| |||||||  |||||||||||    
T  5340756 tctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa 5340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University