View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20073_low_7 (Length: 430)

Name: NF20073_low_7
Description: NF20073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20073_low_7
NF20073_low_7
[»] chr7 (7 HSPs)
chr7 (19-263)||(28463493-28463739)
chr7 (317-361)||(22719926-22719970)
chr7 (317-361)||(9939433-9939477)
chr7 (317-361)||(10027632-10027676)
chr7 (317-361)||(29241537-29241581)
chr7 (317-361)||(36698751-36698795)
chr7 (317-361)||(47359511-47359555)
[»] chr5 (3 HSPs)
chr5 (313-352)||(1411341-1411380)
chr5 (317-352)||(19011190-19011225)
chr5 (313-352)||(15523696-15523735)
[»] chr2 (2 HSPs)
chr2 (317-362)||(26646366-26646411)
chr2 (317-361)||(12758558-12758602)
[»] chr4 (7 HSPs)
chr4 (317-361)||(24539689-24539733)
chr4 (319-361)||(55809888-55809930)
chr4 (317-361)||(25887292-25887336)
chr4 (317-361)||(29690941-29690985)
chr4 (317-361)||(48694724-48694768)
chr4 (318-361)||(54782636-54782679)
chr4 (187-231)||(27782154-27782198)
[»] scaffold0369 (1 HSPs)
scaffold0369 (317-361)||(14387-14431)
[»] chr8 (3 HSPs)
chr8 (317-361)||(15270133-15270177)
chr8 (317-361)||(45193866-45193910)
chr8 (317-352)||(13011915-13011950)
[»] chr3 (3 HSPs)
chr3 (317-361)||(35656488-35656532)
chr3 (317-361)||(32741112-32741156)
chr3 (317-361)||(33426364-33426408)
[»] chr1 (2 HSPs)
chr1 (319-361)||(21356255-21356297)
chr1 (317-361)||(496978-497022)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 28463739 - 28463493
Alignment:
Q  19 aaagttacta--atgattcacgtgcttcaaaagcttatgtttatttgtgcttaaaattcctcatcgtaagaggaaataggtttatgagaaagagaaacat 116  Q
    ||||||||||  ||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  28463739 aaagttactactatgattcacctgcttaaaaagtttatgcttatttgtgcttcaaattcctcatcgtaaggggaaataggtttatgagaaagagaaacat 28463640  T
Q  117 gttatgttcatgaatctcgaagtaagaaaattcgtccaaaaagaacatcatttaaaaacattatattatctgcaaattagtatgtaatgttatgttatga 216  Q
    |||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28463639 gttatgttcatgaatctcgaagtaagaaaactcgtctataaagtacatcatttaaaaacattatattatctgcaaattagtatgtaatgttatgttatga 28463540  T
Q  217 ataactggatgctcctaaaattagtatgtaatgttatgttgtgaaca 263  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28463539 ataactagatgctcctaaaattagtatgtaatgttatgttatgaaca 28463493  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 22719970 - 22719926
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  22719970 ccaaaattggggaggcccagctctatagagctgtttgcacctccc 22719926  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 9939433 - 9939477
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  9939433 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 9939477  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 10027676 - 10027632
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  10027676 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 10027632  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 29241537 - 29241581
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  29241537 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 29241581  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 36698751 - 36698795
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  36698751 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 36698795  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 47359511 - 47359555
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||| ||||||||||||||||||| ||||| ||| ||||    
T  47359511 ccaaaattggagaggcccagctctatagagttgtttgcacctccc 47359555  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 1411380 - 1411341
Alignment:
Q  313 ggctccaaaattggggaggcccagctctatagagctgttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1411380 ggctccaaaattggggaggcccagctctatagagctgttt 1411341  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 19011225 - 19011190
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgttt 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  19011225 ccaaaattggggaggcccagctctatagagctgttt 19011190  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 15523735 - 15523696
Alignment:
Q  313 ggctccaaaattggggaggcccagctctatagagctgttt 352  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  15523735 ggctccaaaattggggaggcccagctcagtagagctgttt 15523696  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 26646411 - 26646366
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccca 362  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  26646411 ccaaaattggggaggcccagctctatagagctgtttgcacctccca 26646366  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 12758602 - 12758558
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  12758602 ccaaaattggggaggcccagctctatagagctgtttgcacctccc 12758558  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 24539733 - 24539689
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  24539733 ccaaaattggggaggcccagctctatagagctgtttgcacctccc 24539689  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 55809930 - 55809888
Alignment:
Q  319 aaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  55809930 aaaattggggaggcccagctctatagagctgtttgcacctccc 55809888  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 25887292 - 25887336
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  25887292 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 25887336  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 29690941 - 29690985
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  29690941 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 29690985  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 48694768 - 48694724
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  48694768 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 48694724  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 54782679 - 54782636
Alignment:
Q  318 caaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||    
T  54782679 caaaattagggaggcccagctctatagagctgtttgcacatccc 54782636  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 27782154 - 27782198
Alignment:
Q  187 tgcaaattagtatgtaatgttatgttatgaataactggatgctcc 231  Q
    |||||||| ||||| ||||||||||||||||| | ||||||||||    
T  27782154 tgcaaattggtatgcaatgttatgttatgaatgattggatgctcc 27782198  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 14431 - 14387
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  14431 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 14387  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 15270133 - 15270177
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  15270133 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 15270177  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 45193866 - 45193910
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  45193866 ccaaaattggggaggcccagctctgtagagctgtttgcacctccc 45193910  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 13011915 - 13011950
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgttt 352  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13011915 ccaaaattgtggaggcccagctctatagagctgttt 13011950  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 35656488 - 35656532
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||    
T  35656488 ccaaaattggggaggtccagctctatagagctgtttgcacctccc 35656532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 32741156 - 32741112
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||||||||||  ||||||||||| ||| ||||    
T  32741156 ccaaaattggggaggcccagctcggtagagctgtttgcacctccc 32741112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 33426408 - 33426364
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    ||||||||||||||||||||||| || ||||||||| ||| ||||    
T  33426408 ccaaaattggggaggcccagctccattgagctgtttgcacctccc 33426364  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 21356255 - 21356297
Alignment:
Q  319 aaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||    
T  21356255 aaaattggggaggcccggctctatagagctgtttgcacctccc 21356297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 496978 - 497022
Alignment:
Q  317 ccaaaattggggaggcccagctctatagagctgtttacacttccc 361  Q
    ||||||||||||||||||| |||||||||| ||||| ||| ||||    
T  496978 ccaaaattggggaggcccaactctatagagttgtttgcacctccc 497022  T

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