View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_10 (Length: 407)
Name: NF20074_high_10
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 4932765 - 4933144
Alignment:
| Q |
17 |
aaattatagagcataatgacatacacatacaagcaagaagatatgatgagagactcacataggaaattgaaatgaatggttgctcatatcgctttcgact |
116 |
Q |
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| T |
4932765 |
aaattatagagcataatgacatacacatataagcaagaagatatgatgagagactcacataggaaattgaaatgaatggttgctcatatcgctttcgact |
4932864 |
T |
|
| Q |
117 |
gaacggtacgagacattcgtcgcataattcttaggttcttcactaggaaccgccaccgctttattacgatcttcatgaattttttccaatgtatttgtat |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
4932865 |
gaacggtacgagacattggtcgcataattcttaggttcttcactaggaaccaccaccgctttattatgatcttcatgaattttgtccaatgtatttgtat |
4932964 |
T |
|
| Q |
217 |
tgacatttgtcgatgttttggttttatcatggtcatcgtccttcaaaactaaatctattttttgttttgatgttttaatattgtccttccccaaaggcaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4932965 |
tgacatttgtcgatgttttggttttatcatggtcatcgtccttcaaaactaaatctattttttcttttgatgttttaatattgtccttccccaaaggcaa |
4933064 |
T |
|
| Q |
317 |
atttgtcgtttcatctaatgcatctattgagccatgagacgagtccggcgacatagaatgtctctccttatccacttcat |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4933065 |
atttgtcgtttcatctaatgcatctattgagccataagacgagtccggcgacatagaatgtctctccttacccacttcat |
4933144 |
T |
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