View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20074_high_17 (Length: 351)

Name: NF20074_high_17
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20074_high_17
NF20074_high_17
[»] chr1 (4 HSPs)
chr1 (54-136)||(37686330-37686412)
chr1 (54-136)||(37699106-37699188)
chr1 (273-333)||(37686551-37686611)
chr1 (273-333)||(37698907-37698967)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 37686330 - 37686412
Alignment:
Q  54 ttaagatattctgatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat 136  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686330 ttaagatattctaatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat 37686412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 37699188 - 37699106
Alignment:
Q  54 ttaagatattctgatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat 136  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37699188 ttaagatattctaatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat 37699106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 37686551 - 37686611
Alignment:
Q  273 cttaaaacttgattaagcttgatcctctaattaaatatcacagaagatcacgcggcaaata 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37686551 cttaaaacttgattaagcttgatcctctaattaaatatcacagaagatcacgcgtcaaata 37686611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 37698967 - 37698907
Alignment:
Q  273 cttaaaacttgattaagcttgatcctctaattaaatatcacagaagatcacgcggcaaata 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37698967 cttaaaacttgattaagcttgatcctctaattaaatatcacagaagatcacgcgtcaaata 37698907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University