View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_18 (Length: 341)
Name: NF20074_high_18
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 194 - 341
Target Start/End: Complemental strand, 44092807 - 44092660
Alignment:
| Q |
194 |
caacgcgctgaattaaagagcaaaaagtttctcgatatcccattaccatcacctatgtttccaaattccaatccatcatttgaatactttatttccacac |
293 |
Q |
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| T |
44092807 |
caacgcgctgaattaaagagcaaaaagtttctcgatatcccattaccatcacctatgtttccaaattccaatccatcatttgaatactttatttccacac |
44092708 |
T |
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| Q |
294 |
ctcccatggtgccttcataacattgttgatgaacatcattaatccacc |
341 |
Q |
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| T |
44092707 |
ctcccatggtgccttcgtaacattgttgatgaacatcattaatccacc |
44092660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 44092998 - 44092846
Alignment:
| Q |
1 |
aatatcacatctcctccaaacatttgataatcannnnnnnngtcaacttaactaaactggcagagacaatgcataatatataccgagatcgtggttcgaa |
100 |
Q |
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| T |
44092998 |
aatatcacatctcctccaaacatttgataatcattttttttgtcagcttaactaaactggtagagataatgcataatatataccgagatcgtggttcgaa |
44092899 |
T |
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| Q |
101 |
ccccag--acaccacacttctgcacatttttaaaatgttgataaagaaaaaaa |
151 |
Q |
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| T |
44092898 |
ccccagacacaccacacttctgtacattttttaaatgttgataaagaaaaaaa |
44092846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 20407304 - 20407356
Alignment:
| Q |
68 |
aatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctg |
120 |
Q |
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| T |
20407304 |
aatgcatattatatgcagagatcggggttcgaaccccagacaccccacttctg |
20407356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 3596269 - 3596338
Alignment:
| Q |
58 |
tggcagagacaatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctgcacattt |
127 |
Q |
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| T |
3596269 |
tggcagagacattgcataatttatgcaggggtcggggttcgaaccccggacaccccacttctccacattt |
3596338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 15939297 - 15939377
Alignment:
| Q |
47 |
cttaactaaactggcagagacaatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctgcacattt |
127 |
Q |
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| T |
15939297 |
cttaactcaattggcagagacattgcataatatatgcagaggttagggttcgaaccccgaacaccccacttctccacattt |
15939377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 44794900 - 44794932
Alignment:
| Q |
49 |
taactaaactggcagagacaatgcataatatat |
81 |
Q |
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| T |
44794900 |
taactcaactggcagagacaatgcataatatat |
44794932 |
T |
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