View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_19 (Length: 326)
Name: NF20074_high_19
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36841766 - 36842075
Alignment:
| Q |
1 |
cagaaatatgtttcctttaattgttgatccaaaaataacgacaatccaataaaaacaacgaagttacattcacaatccattatagatgcagagccgtaaa |
100 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36841766 |
cagaaacacgtttcctttaattgttgatccaaaaataacgacaatccaataaaaacaacgaagttacattcacaatccattctagatgcagagccgtaaa |
36841865 |
T |
|
| Q |
101 |
actgaataactaaacccaaaaaagcactgataagttgatcacttgcagaaagtgaacaaaccgaaataagtaccaagcttcaatcggaagaaccgataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36841866 |
actgaataactaaacccaaaaaagcactgataagttgatcacttgcagaaagtgaacaaaccgaaataagtaccaagcttcaatcggaagaaccgataaa |
36841965 |
T |
|
| Q |
201 |
aaacaaagaacacaagacatatacatatacaaaatagtgaaaaagagaatgagaaccacggtgaacccaatacataagtctcaaggaatatcttcccagc |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36841966 |
aaacaaagaacacaatacatatacatatacaaaatagtgaaaaagagaatgagaaccacagtgaacccaatacataagtctcaaggaatatcttcccagc |
36842065 |
T |
|
| Q |
301 |
ttgtgagagc |
310 |
Q |
| |
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|||||||||| |
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| T |
36842066 |
ttgtgagagc |
36842075 |
T |
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