View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_2 (Length: 573)
Name: NF20074_high_2
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 13966323 - 13966861
Alignment:
| Q |
13 |
caaagggtggcgatggagaacaaaaagcacatatctctaactcgcnnnnnnntgttgatatgctatgtcaatcaataaaattcaaagaaacatgtcacaa |
112 |
Q |
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| T |
13966323 |
caaagggtggcgatggagaacaaaaagcacatatctctaactcgcaaaaaaatgttgatatgctatgtcaatcaacaaaattcaaagaaacatgtcacaa |
13966422 |
T |
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| Q |
113 |
aactcttgaaaaagcgtcattcaccaacatgaaaaatcgtatcaaaggagctttgggtgcaacagcagaggaattacggaaacacataaacaattcagca |
212 |
Q |
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| T |
13966423 |
aactcttgaaaaagcgtcattcagcaacatgaaaaatcgtatcaaaggagctttgggtgcaacagaagaggaattacggaaacacataaacaattcagca |
13966522 |
T |
|
| Q |
213 |
ctttatcaagaattggcaacagacagcatgacaaaacaagcgatggaaatttgcgatgaagttttggattatgccgttgatggaattcataaatctgttg |
312 |
Q |
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| T |
13966523 |
ctttatcaagaattggcaacagacagcatgacaaaacaagcgatggaaatttgcaatgaagttttggattatgctgttgatggaattcataaatctgttg |
13966622 |
T |
|
| Q |
313 |
gcacattggaccaatttgatttccataacctaagtgaatatgcttttgatatcaaagtttggttaactggtacactttctcatcaacaaacatgtttaga |
412 |
Q |
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| T |
13966623 |
gtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggttaactggtacactttctcatcaacaaacatgtttaga |
13966722 |
T |
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| Q |
413 |
tggttttgtaaatacaaaaacaaatgctggtcaaacaatggctaaggttttgaaaacttctatggaattaagtagtaatgccattgacatgatggatgtt |
512 |
Q |
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| T |
13966723 |
tggttttgtaaatacaaaaacaaaagctggtgaaacaatgactaaggttttgaaaacttctatggaattaagtagtaatgccattgacatgatggatgtt |
13966822 |
T |
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| Q |
513 |
gtttcgcgcatacttaagggtttccatccatcccaatat |
551 |
Q |
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| T |
13966823 |
gtttcgcacataattaagggtttcaatccatcccaatat |
13966861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 65 - 551
Target Start/End: Original strand, 13976543 - 13977029
Alignment:
| Q |
65 |
tgttgatatgctatgtcaatcaataaaattcaaagaaacatgtcacaaaactcttgaaaaagcgtcattcaccaacatgaaaaatcgtatcaaaggagct |
164 |
Q |
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| T |
13976543 |
tgttgatatgctatgtcaatcaacagaatacaaagaaacatgtcacaaaagtcttgaaaacgcgtcatcaaccgacacgaaagagcttatcaaagcagct |
13976642 |
T |
|
| Q |
165 |
ttgggtgcaacagcagaggaattacggaaacacataaacaattcagcactttatcaagaattggcaacagacagcatgacaaaacaagcgatggaaattt |
264 |
Q |
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| T |
13976643 |
ttcagtgcaacagcagaggaattacggaaacacataaacaattcagcactttatcaagaattgggaaaagacagcatgacaaaacaagcaatggaaattt |
13976742 |
T |
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| Q |
265 |
gcgatgaagttttggattatgccgttgatggaattcataaatctgttggcacattggaccaatttgatttccataacctaagtgaatatgcttttgatat |
364 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13976743 |
gcaacgaagttttggattatgccgttgatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatat |
13976842 |
T |
|
| Q |
365 |
caaagtttggttaactggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaatgctggtcaaacaatggctaaggttttg |
464 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| ||||||||||| |
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| T |
13976843 |
caaggtttggttaactggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaacaacaaaagctggtgaaacaatgactaaggttttg |
13976942 |
T |
|
| Q |
465 |
aaaacttctatggaattaagtagtaatgccattgacatgatggatgttgtttcgcgcatacttaagggtttccatccatcccaatat |
551 |
Q |
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| T |
13976943 |
aaaacttctatggaattaagtagtaatgccattgacatgatggatgttgtttcgcacttctttaagggtttcgatccatcccaatat |
13977029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 152 - 516
Target Start/End: Original strand, 13958912 - 13959276
Alignment:
| Q |
152 |
tatcaaaggagctttgggtgcaacagcagaggaattacggaaacacataaacaattcagcactttatcaagaattggcaacagacagcatgacaaaacaa |
251 |
Q |
| |
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|||||||| |||||| |||||||| ||||||| ||| |||||||||||||| |||| | ||| ||||||||| | | ||||| |||||||||||| |
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| T |
13958912 |
tatcaaagcagctttcagtgcaacatcagaggagttattgaaacacataaacagttcatctcttattcaagaattaggacaagacaagatgacaaaacaa |
13959011 |
T |
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| Q |
252 |
gcgatggaaatttgcgatgaagttttggattatgccgttgatggaattcataaatctgttggcacattggaccaatttgatttccataacctaagtgaat |
351 |
Q |
| |
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|| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||| | |||| || ||||| |
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| T |
13959012 |
gcaatggaagtttgcaatgaagttttggattatgctgttgatggaattcataaatctgttggtgcagtggataaatttgatattaataagatacatgaat |
13959111 |
T |
|
| Q |
352 |
atgcttttgatatcaaagtttggttaactggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaatgctggtcaaacaat |
451 |
Q |
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| T |
13959112 |
attcttatgatctcaaagtttggttaaccggtacactttctcatcaacaaacatgtttggatggttttgcaaatacaacaacaaaagccggtgaaacaat |
13959211 |
T |
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| Q |
452 |
ggctaaggttttgaaaacttctatggaattaagtagtaatgccattgacatgatggatgttgttt |
516 |
Q |
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||||| || |||||| || ||||| ||||||| |||||||| ||||||||| | |||| ||||| |
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| T |
13959212 |
ggctagggctttgaacacgtctatccaattaagcagtaatgctattgacatggttgatgctgttt |
13959276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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