View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20074_high_21 (Length: 320)

Name: NF20074_high_21
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20074_high_21
NF20074_high_21
[»] chr6 (1 HSPs)
chr6 (1-298)||(17362986-17363283)
[»] chr3 (3 HSPs)
chr3 (136-192)||(43939257-43939312)
chr3 (141-194)||(44657692-44657743)
chr3 (141-194)||(45526168-45526219)
[»] chr1 (1 HSPs)
chr1 (130-204)||(42862675-42862749)
[»] chr2 (1 HSPs)
chr2 (130-204)||(14185954-14186028)
[»] chr7 (1 HSPs)
chr7 (138-213)||(5355510-5355584)
[»] chr5 (1 HSPs)
chr5 (127-184)||(17865104-17865161)
[»] chr4 (2 HSPs)
chr4 (141-194)||(49250856-49250907)
chr4 (154-199)||(34638269-34638314)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 17362986 - 17363283
Alignment:
Q  1 ccagtggcggtgcgaccgccactgatgctgacatcaccatgtccatgtgtgaaaatatgttttttataagttggaacaactttctgcataacaagatttc 100  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  17362986 ccagtggcggtgcgaccgccactgatcctgacaccaccatgtccatgtgtgaaaatatgttttttataagttggaacaactttctggataacaagatttt 17363085  T
Q  101 acttaaaaattgttgcgataactttcacaattttgtcagtttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaattccat 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17363086 acttaaaaattgttgcaataactttcacaattttgtcagtttacataatgttagcttattcgagaaattaatgtttaaattcaaattgacaaaattccat 17363185  T
Q  201 caaaacaatgagagtataggtgatgggtctctgattcaggtaatgaaagatctatggattctcggagaaggttcaacatgggttaattcgcctcaacc 298  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  17363186 caaaacattgagagtataggtgatgggtctctgattcaggtaatgaaagatctatggattcttggagaaggttcagcatgggttcattcgcctcaacc 17363283  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 43939312 - 43939257
Alignment:
Q  136 tcagtttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaa 192  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  43939312 tcagtttacata-tgttagcttattccagaaattaatgttcaaattcaaattgacaa 43939257  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 44657743 - 44657692
Alignment:
Q  141 ttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaa 194  Q
    |||| |||||||| ||||||| |||||||||||||  |||||||||||||||||    
T  44657743 ttacgtaatgttaccttattcaagaaattaatgtt--aattcaaattgacaaaa 44657692  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 45526219 - 45526168
Alignment:
Q  141 ttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaa 194  Q
    |||| |||||||| ||||||| |||||||||||||  |||||||||||||||||    
T  45526219 ttacgtaatgttatcttattcaagaaattaatgtt--aattcaaattgacaaaa 45526168  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 42862749 - 42862675
Alignment:
Q  130 attttgtcagtttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaattccatcaaa 204  Q
    ||||| |||||||| ||||||  ||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||    
T  42862749 attttatcagtttatataatgaaagcttattcaagaaattaatgttcaaatttaaattgacaaaattccagcaaa 42862675  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 14185954 - 14186028
Alignment:
Q  130 attttgtcagtttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaattccatcaaa 204  Q
    ||||| |||||||| ||||||  || |||||| ||||||||||||| ||||| ||||||||||||||||| ||||    
T  14185954 attttatcagtttatataatgaaaggttattcaagaaattaatgttcaaatttaaattgacaaaattccagcaaa 14186028  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 5355584 - 5355510
Alignment:
Q  138 agtttacataatgtt-agcttattccagaaattaatgtttaaattcaaattgacaaaattccatcaaaacaatgaga 213  Q
    ||||||||||||||| | ||||||| |||||||||||||  |||||||||||||||||||||| |||| || |||||    
T  5355584 agtttacataatgtttatcttattcaagaaattaatgtt--aattcaaattgacaaaattccagcaaatcagtgaga 5355510  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 17865104 - 17865161
Alignment:
Q  127 acaattttgtcagtttacataatgttagcttattccagaaattaatgtttaaattcaa 184  Q
    ||||||||  |||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  17865104 acaattttaccagtttacatgatgttagtttattccagaaattaaagtttaaattcaa 17865161  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 49250907 - 49250856
Alignment:
Q  141 ttacataatgttagcttattccagaaattaatgtttaaattcaaattgacaaaa 194  Q
    |||| |||||||| ||||||| |||||||||||||  |||||||||||||||||    
T  49250907 ttacgtaatgttaccttattcaagaaattaatgtt--aattcaaattgacaaaa 49250856  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 34638314 - 34638269
Alignment:
Q  154 gcttattccagaaattaatgtttaaattcaaattgacaaaattcca 199  Q
    |||||||||| ||||||||||| ||||| || ||||||||||||||    
T  34638314 gcttattccaaaaattaatgttcaaattaaacttgacaaaattcca 34638269  T

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