View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_25 (Length: 307)
Name: NF20074_high_25
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_25 |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 33982733 - 33982432
Alignment:
| Q |
5 |
gtgtaccgatcaagtataatataaagaagtaaattatttttctttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgt |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33982733 |
gtgtactgatcaagtataatataaagaagtaaattattttcctttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgt |
33982634 |
T |
|
| Q |
105 |
agcatcattttataatccaacggtaggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaac |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
33982633 |
agcatcattttataatccaacggtaggtcaattcgggaactagtaaatcttaatatgctttttccgtcc-tttttttagttatctttacttaaaattaac |
33982535 |
T |
|
| Q |
205 |
aagaactcaacaattcaatttagccatgtgaaggaatttaacaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattgatagaat |
304 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33982534 |
aagaacacaacaatttaatttagccatatgaaggaatttaacaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattgatagagt |
33982435 |
T |
|
| Q |
305 |
tat |
307 |
Q |
| |
|
||| |
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|
| T |
33982434 |
tat |
33982432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 47 - 298
Target Start/End: Original strand, 24437834 - 24438108
Alignment:
| Q |
47 |
tttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgtagcatcattttat-aatccaacgg----------------ta |
129 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| || || |
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| T |
24437834 |
tttgtttatcaataagtagttttatgaaggataaggtagttatgttcatatatagtgtagcatcattttataaatccaatggaggtctttatatacatta |
24437933 |
T |
|
| Q |
130 |
ggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaacaagaactcaacaattcaatttagcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
24437934 |
ggtcaattctggaactagtaaatcttaatatgtttttttcgtcc-ttttttaagttaacttcacttaaaattaacaagaactcaacaatttaattttgcc |
24438032 |
T |
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| Q |
230 |
atgtgaaggaattt-------aacaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
298 |
Q |
| |
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|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438033 |
atgtgatggaatttaaaaaaaaaaaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
24438108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 26601809 - 26601861
Alignment:
| Q |
188 |
cttcacttaaaattaacaagaactcaacaattcaatttagccatgtgaaggaa |
240 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
26601809 |
cttcactttaaatacacaagaactcaacaatttcatttagccatgcgaaggaa |
26601861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 38729396 - 38729077
Alignment:
| Q |
1 |
ttttgtgtaccgatcaagtataatataaagaagtaaattatttttctttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatata |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729396 |
ttttgtgtactgatcaggtataatataaggaattaaattattttcctttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatata |
38729297 |
T |
|
| Q |
101 |
gtgtagcatcattttataatccaacg----------------gtaggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagt |
184 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||| ||||||| ||| | | |
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| T |
38729296 |
gtgtagcatcattttgtaatccaacgaaggtctttatatacattaggtcaattctagaactagtaaatctt--gatgttttttccatcctttttttaa-t |
38729200 |
T |
|
| Q |
185 |
tatcttcacttaaaattaacaagaactcaacaattcaatttagccatgtgaaggaatttaacaaatgaatatttgatggtgtaatataatatgtgtttct |
284 |
Q |
| |
|
|| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38729199 |
taacttcatttaaaattaacaagaattcaacaatttaatttagccatgtgaaggaatttaacaaatgaatatttgatggtgtaatataatatgtgtttca |
38729100 |
T |
|
| Q |
285 |
tagaagttcattgatagaattat |
307 |
Q |
| |
|
|||||||||||||||||| |||| |
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| T |
38729099 |
tagaagttcattgatagagttat |
38729077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 47 - 298
Target Start/End: Complemental strand, 16143392 - 16143124
Alignment:
| Q |
47 |
tttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgtagcatcattttataa-tccaacgg----------------ta |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
16143392 |
tttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgtagcatcattttataaatccaacggaggtctttatatacatta |
16143293 |
T |
|
| Q |
130 |
ggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaacaagaactcaacaattcaatttagcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
16143292 |
ggtcaattctggaactagtaaatcttaatatgcttttttcgtc-tttttttaagttaacttcacttaaaattaacaagaactcaacaatttaattttgcc |
16143194 |
T |
|
| Q |
230 |
atgtgaaggaattt-aacaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
298 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
16143193 |
atgtgaaggaatttaaaaaaatgaatatttgatggtgtcatataatatgtgtttcttataagttcattga |
16143124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 47 - 298
Target Start/End: Original strand, 12179234 - 12179506
Alignment:
| Q |
47 |
tttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgtagcatcattttataa-tccaacgg----------------ta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| || || |
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|
| T |
12179234 |
tttgtttatcaataagtagttttatgaaggataaggtagttgtgttcatatatagtgtagcatcattttataaattcaatggaggtctttatatacatta |
12179333 |
T |
|
| Q |
130 |
ggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaacaagaactcaacaattcaatttagcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| | | |
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| T |
12179334 |
ggtcaattctggaactagtaaatcttaatatgcttttttcgtcctttttta-agttaacttcacttaaaattaacaagaactcaacaatttaattttgtc |
12179432 |
T |
|
| Q |
230 |
atgtgaaggaattt-----aacaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
298 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12179433 |
atgtgaaggaatttaaaaaaaaaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
12179506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 128 - 298
Target Start/End: Complemental strand, 21351333 - 21351159
Alignment:
| Q |
128 |
taggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaacaagaactcaacaattcaatttag |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
21351333 |
taggtcaattctggaactagtaaatcttaatatgcatttttcgtcctttttta-agtttacttcacttaaaattaacaagaactcaacaatttaattttg |
21351235 |
T |
|
| Q |
228 |
ccatgtgaaggaatttaacaa-----atgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
298 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21351234 |
ccatgtgaaggaatttaaaaaaaaatatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
21351159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 21354083 - 21354011
Alignment:
| Q |
47 |
tttgtttatcaataagtagttttatgaaggatgaggtagttgtgttcatatatagtgtagcatcattttataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21354083 |
tttgtttatcaataagtagttttatgaaggataaggtagttgtgttcatatagagtgtagcatcattttataa |
21354011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 1444228 - 1444403
Alignment:
| Q |
128 |
taggtcaattctggaactagtaaatcttaatatgctttttccgtccnnnnnnnnagttatcttcacttaaaattaacaagaactcaacaattcaatttag |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
1444228 |
taggtcaattctgaaactagtaaatcttaatatgtttttttcgtcctttttta-agttaacttcacttaaaattaacaagaactcaacaatttaattttg |
1444326 |
T |
|
| Q |
228 |
ccatgtgaaggaatttaacaaa------tgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
298 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1444327 |
ccatgtgatggaatttaaaaaaaaaaaatgaatatttgatggtgtaatataatatgtgtttcttagaagttcattga |
1444403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 1444166 - 1444202
Alignment:
| Q |
83 |
tagttgtgttcatatatagtgtagcatcattttataa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1444166 |
tagttgtgttcatatatagtgtagcatcattttataa |
1444202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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