View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_27 (Length: 292)
Name: NF20074_high_27
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18170885 - 18170708
Alignment:
| Q |
1 |
atggaatcaacaacacatagagtaaagtgggaaaacaagaaagtaaaaacaaactacacactttccttcttttctctccttttaagactcaaaattgagc |
100 |
Q |
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| T |
18170885 |
atggaatcaacaacacatagagtaaagtgggaaaacaagaaaataaaaacaaactacacactttccttcttttctctccttttaagactcaaaattgagc |
18170786 |
T |
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| Q |
101 |
tgttatactttctcttattgctccatcatagattctcttcaccccatttaagtcaaagaaaaaagtgtagaaggaata |
178 |
Q |
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| T |
18170785 |
tgttatactttctcttattgctccatcatagattctcttcaccccatttaagtcaaagaaaaaagtgtagaaggaata |
18170708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 18170675 - 18170603
Alignment:
| Q |
212 |
gtaggtatgaaatggcttatggcatatattcctccaacataaccccactaatgtttcctgatatgaagtgaga |
284 |
Q |
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| T |
18170675 |
gtaggtatgaaatggcttatggcatatattcctccaacataaccccactaatgtttcctgatatgaagtgaga |
18170603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 31749626 - 31749572
Alignment:
| Q |
230 |
atggcatatattcctccaacataaccccactaatgtttcctgatatgaagtgaga |
284 |
Q |
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| T |
31749626 |
atggcatatattcccccaacataaccccactcatgcttccttatatggagtgaga |
31749572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 31749792 - 31749758
Alignment:
| Q |
70 |
ttttctctccttttaagactcaaaattgagctgtt |
104 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
31749792 |
ttttctctccttttaagactctaaattgagctgtt |
31749758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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