View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_3 (Length: 552)
Name: NF20074_high_3
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 69 - 544
Target Start/End: Complemental strand, 50766836 - 50766361
Alignment:
| Q |
69 |
agcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacagga |
168 |
Q |
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| T |
50766836 |
agcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacagga |
50766737 |
T |
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| Q |
169 |
tttggaatgtggcaatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcataacaggaaagtaaagaacagattgt |
268 |
Q |
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| T |
50766736 |
tttggaatgtgacaatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcatagcaggaaagtaaagaacggattgt |
50766637 |
T |
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| Q |
269 |
gttaggtgtgactcctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaat |
368 |
Q |
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| T |
50766636 |
gttaggtgtgactcctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaat |
50766537 |
T |
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| Q |
369 |
ttaaatttgttcagatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttggacaaaagtt |
468 |
Q |
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| T |
50766536 |
ttaaatttgttcagatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttggacaaaagtt |
50766437 |
T |
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| Q |
469 |
tctatacaaggaggcagaatccacatatctgcagcttcatgaggctagatgcattcctaatgaagatacctatgct |
544 |
Q |
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| T |
50766436 |
tctatacaaggaggcagaatccacatatctgcagcttcatgaggctagatgcattcctaatgaagatacctatgct |
50766361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 50766885 - 50766854
Alignment:
| Q |
20 |
gctagtgcatgcatactaatcttatacttcca |
51 |
Q |
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| T |
50766885 |
gctagtgcatgcatactaatcttatacttcca |
50766854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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