View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_31 (Length: 272)
Name: NF20074_high_31
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_31 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 31045063 - 31045334
Alignment:
| Q |
1 |
aagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctcctaaagcct |
100 |
Q |
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| T |
31045063 |
aagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctcctaaagcct |
31045162 |
T |
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| Q |
101 |
caccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacat |
200 |
Q |
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| T |
31045163 |
caccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacat |
31045262 |
T |
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| Q |
201 |
gttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtc |
272 |
Q |
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| T |
31045263 |
gttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtc |
31045334 |
T |
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Target: scaffold0018 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 172321 - 172039
Alignment:
| Q |
4 |
agctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaaa-gttgctcttctccta |
94 |
Q |
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| T |
172321 |
agctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaaatgttgctcttctctta |
172222 |
T |
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| Q |
95 |
aagcctcaccaaacgaagtttg------cggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaac |
188 |
Q |
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||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || | |
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| T |
172221 |
aagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaattcaatc |
172123 |
T |
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| Q |
189 |
tcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtc |
272 |
Q |
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| T |
172122 |
tcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgtc |
172039 |
T |
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