View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_39 (Length: 246)
Name: NF20074_high_39
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44730106 - 44730323
Alignment:
| Q |
1 |
ttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacataagctctgctactgtta |
100 |
Q |
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| T |
44730106 |
ttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacataagctctgctactgtta |
44730205 |
T |
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| Q |
101 |
ttggttgatcaaattcttgaactgaaccatcatagtaaatgattttggttgtggcatgaaatgagatatggtttcccataagaggatattgttatgagtc |
200 |
Q |
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| T |
44730206 |
ttggttgatcaaattcttgaactgaaccatcatagtaaatgattttggttgtggcatgaaatgagatatggtttcccataagaggatattgttatgagcc |
44730305 |
T |
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| Q |
201 |
aatacaaggtgttgatgt |
218 |
Q |
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| T |
44730306 |
aatacaaggtgttgatgt |
44730323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39083969 - 39083839
Alignment:
| Q |
1 |
ttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacataagctctgctactgtta |
100 |
Q |
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|||||||| ||||| ||||||||| |||| ||||||| ||||||||||||||||| || || | || ||| ||||| | ||| | |||||| ||||||| |
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| T |
39083969 |
ttgtcagcaggtaatggtgttggtcttttttggttcacagctgaatgaaactcaactactactttttgtggatgatccatcattaactctgccactgtta |
39083870 |
T |
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| Q |
101 |
ttggttgatcaaattcttgaactgaaccatc |
131 |
Q |
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| T |
39083869 |
ttgcttcatcaaattcatgaactgaaccatc |
39083839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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