View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_40 (Length: 237)
Name: NF20074_high_40
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 12649132 - 12649298
Alignment:
| Q |
54 |
tataatcttgttaaacgatgtattttacctgcggatcaaaattttgaatgctcaatttttggctaagtatgggtatcaatttgaggtatgttgggtcttg |
153 |
Q |
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| T |
12649132 |
tataatcttgttaaaagatgtattttac-tgctgatcaaaattttgaatgctcaatttttggctaagtatgggtatcaatttggggtatgttgggtcttg |
12649230 |
T |
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| Q |
154 |
caagcgttttgtcgaatgaattggtggctcgtgttcaacaatttagtaatagtcatggatacatttaa |
221 |
Q |
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| T |
12649231 |
caagcgttttgtcgaatgaagtggtggctcgtgttcaacaatttagtaatagtcatagatacatttaa |
12649298 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 12649066 - 12649116
Alignment:
| Q |
6 |
tacaatttcccatttaatggtgttggttatgttaaaagtctccatgtttat |
56 |
Q |
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| T |
12649066 |
tacaattccccatttaaaagtgttggttatgttaaaagtctccatgtttat |
12649116 |
T |
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