View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_43 (Length: 236)
Name: NF20074_high_43
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1453740 - 1453519
Alignment:
| Q |
1 |
atgaggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1453740 |
atgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagag |
1453641 |
T |
|
| Q |
101 |
tctcacatcaccttaaccttattgctttcctatgttgactctcaaatattctccaaatacgttttcttctgttattctgtttatttatgttgtttctagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1453640 |
tctcacatcaccttaaccttattgctttcctatgttgactctcgaatattctccaaatacgttttcttctgttattctatttatttatgttgtttctagt |
1453541 |
T |
|
| Q |
201 |
ttttgatgctgactttatagct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
1453540 |
ttttgatgctgactttatagct |
1453519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1465432 - 1465211
Alignment:
| Q |
1 |
atgaggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1465432 |
atgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagag |
1465333 |
T |
|
| Q |
101 |
tctcacatcaccttaaccttattgctttcctatgttgactctcaaatattctccaaatacgttttcttctgttattctgtttatttatgttgtttctagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1465332 |
tctcacatcaccttaaccttattgctttcctatgttgactctcgaatattctccaaatacgttttcttctgttattctatttatttatgttgtttctagt |
1465233 |
T |
|
| Q |
201 |
ttttgatgctgactttatagct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
1465232 |
ttttgatgctgactttatagct |
1465211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 370685 - 370570
Alignment:
| Q |
4 |
aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||| |||||| |||||| ||| | || | |||||||||||||||||||||||| |
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|
| T |
370685 |
aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttcaacttcattcatctctaatgtctacgttgagagtct |
370586 |
T |
|
| Q |
104 |
cacatcaccttaacct |
119 |
Q |
| |
|
|| |||||||| |||| |
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|
| T |
370585 |
catatcaccttgacct |
370570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 1441999 - 1441935
Alignment:
| Q |
4 |
aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttct |
68 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||| ||||||||| ||| |||||||||||||||||| |
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|
| T |
1441999 |
aggtatatgcttataattacaagaatggtactgtaaagattcataatattcaaggcctcccttct |
1441935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 1459423 - 1459317
Alignment:
| Q |
7 |
tatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcac |
106 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| ||||||| || || || |||||||| ||||||||||||| |||||||||| |
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|
| T |
1459423 |
tatatgtttacaattacaagaatcgtatttcaaagattcctgagattcatgg------ttttactaggtttacttctaatgtctacgcagagagtctcat |
1459330 |
T |
|
| Q |
107 |
atcaccttaacct |
119 |
Q |
| |
|
|||||||| |||| |
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|
| T |
1459329 |
atcaccttgacct |
1459317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 176488 - 176548
Alignment:
| Q |
4 |
aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctccc |
64 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||||| ||| ||||||||||||||||| |
|
|
| T |
176488 |
aggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcctccc |
176548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 176599 - 176668
Alignment:
| Q |
85 |
atgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattctcc |
154 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||| ||||||| || || || |||||||| ||||||| |
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|
| T |
176599 |
atgtctatgttgagagtctcatatcaccttgacctacttgctttgctctgctggctctcaaagattctcc |
176668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 1470798 - 1470750
Alignment:
| Q |
11 |
tgtttacaattacaagaatcgtactctaaagattcctaagattcaaggc |
59 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| |||||||||| |
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|
| T |
1470798 |
tgtttacaattacaaggatggtactgtaaagattcctgggattcaaggc |
1470750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 55419942 - 55420050
Alignment:
| Q |
13 |
tttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcacc |
112 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||||| | ||||||||||||||||| || ||| | ||||| ||||||| |||| ||||| | |||||| |
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|
| T |
55419942 |
tttacaattataagaatggtaatgtaaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcacc |
55420041 |
T |
|
| Q |
113 |
ttaacctta |
121 |
Q |
| |
|
|| |||||| |
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|
| T |
55420042 |
ttgacctta |
55420050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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