View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_46 (Length: 215)
Name: NF20074_high_46
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11363238 - 11363025
Alignment:
| Q |
1 |
ttaaacataagtgttttcattgaaaagtcacctaacagttcatcaggcatttggcttccgtttgcaattccaaccacagattttcgctgcaaacacatac |
100 |
Q |
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| T |
11363238 |
ttaaacataagtgttttcattgaaaagtcacctaacagttcatcaggcatttggcttccggttgcaattccaaccacagattttctctgcaaacacatac |
11363139 |
T |
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| Q |
101 |
ttaatttaaatacaagtaattcagaggaacttaagcatgaggaagaccaccaaaatttctatgatgtttaagataaagaagatcaaaatggaatctataa |
200 |
Q |
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| T |
11363138 |
ttaatttaa-tacaagtaattcagaggaacttaagcatgaggaagaccaccaaaatttctatgatgtttaagataaagaagaccaaaatggaatctataa |
11363040 |
T |
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| Q |
201 |
ttcaaaaaacttcaa |
215 |
Q |
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||||||||||||||| |
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| T |
11363039 |
ttcaaaaaacttcaa |
11363025 |
T |
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