View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_high_8 (Length: 475)
Name: NF20074_high_8
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 43016551 - 43016099
Alignment:
| Q |
1 |
tacatctatatacaacatcgcaaataagagaaaaaataaacatattaattccacttatttctctaaacgtgttgaatatatgattatgatcatgacattt |
100 |
Q |
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| T |
43016551 |
tacatctatatacagcatcgaaaataagagaaaaaataaacatattaattccacttatttctctaaacgtgttgaatatatgattatgatcatgacattt |
43016452 |
T |
|
| Q |
101 |
tgattgaaaagtcaataagttacaacataggattacttcaaagttcatacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaat |
200 |
Q |
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| T |
43016451 |
tgattgaaaagtcaataagttacaacataggattacttcaaagttcatacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaat |
43016352 |
T |
|
| Q |
201 |
gctatatacaaactattttcagtaacatctgataaataaataaatacaatacactatttgtacacctcataggtataaaattatgatcaagagtggaatc |
300 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43016351 |
gctatatacaaactattttcagtaa---ctg----ataaataaatacaatacactatttgtacacctcataggtatagaattatgatcaagagtggaatc |
43016259 |
T |
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| Q |
301 |
tacaaaggaattcaataaaagccttcacgaaaactcatttgttaatttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016258 |
tacaaaggaattcaataaaagccttcacgaaaactcatttgttaatttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatct |
43016159 |
T |
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| Q |
401 |
gtgatgttgctgtgatgcaagatacatgtgatgtgactaactaaacaccaccgtcctttg |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016158 |
gtgatgttgctgtgatgcaagatacatgtgatgtgactaactaaacaccaccgtcctttg |
43016099 |
T |
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