View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_12 (Length: 402)
Name: NF20074_low_12
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 45069734 - 45069360
Alignment:
| Q |
10 |
aagaatataagcgatggtttagagagttgactaattgtatctacatctccaacaacaaatgattgatttgatttttgattattcaagtttatgattgcat |
109 |
Q |
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| T |
45069734 |
aagaacataagcgatggtttagagagttgactaattgtatctacatctccaacaacaaatgattgatttgatttttgattattcaagtttatgattgcat |
45069635 |
T |
|
| Q |
110 |
attacaaattgttattaaatactactacagtccaatgtacaagattaggttcaggttcgctagctctgctagcgaaactgtccacttatcaacaaatatg |
209 |
Q |
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| T |
45069634 |
attacaaattgttattaaatactactacagtccaatgtacaagattaggttcaggttcgctagctctgctagcgaaactgtccacttatcaacaaatatg |
45069535 |
T |
|
| Q |
210 |
agtcatactcagtagtactaacagaagtgactctttactcactagttatggttccgattaaaatattcttgccattatggaaaattactctactaagcct |
309 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45069534 |
agtcatactcagtagtaccaacagaagtggctctttactcactagttatggttccgattaaaatattcttgccattatggaaaattactctactaagcct |
45069435 |
T |
|
| Q |
310 |
atgtttggttggacggtggaatatacattctcgcgtcccaaggcttgaaaaacgtgaaaatatagaagctccaat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45069434 |
atgtttggttggacggtggaatatacattctcgcgtcccaaggcttgaaaaacgtgaaaatatataagctccaat |
45069360 |
T |
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