View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_16 (Length: 392)
Name: NF20074_low_16
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 12120468 - 12120845
Alignment:
| Q |
1 |
atcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaacacccaatcgattaccccattaaa-ttgggtgt |
99 |
Q |
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| T |
12120468 |
atcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaacacccaaacgattaccccattaaaattgggtgt |
12120567 |
T |
|
| Q |
100 |
aatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaatttagggacatcgctgggaattaggacttggtgt |
199 |
Q |
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| T |
12120568 |
aatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaatttagggacatcgctgggaattaggacttggtgt |
12120667 |
T |
|
| Q |
200 |
tgaatatgttactgaacattttccatatgcatttttcttcaatctggactctaaaatgtggagactgtaatgttgatggaatttaggatattgaaatatt |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
12120668 |
tgaatatgttactgaacattttccatatacatttttcttcaatctggactctaaaatgtggtggctgtaatgttgatggaatttaggatattgaaatatt |
12120767 |
T |
|
| Q |
300 |
ggtgcttgttatcagtccctcatgcccattattttaaacttttataaataatgcttatcctctatgcatacacttcat |
377 |
Q |
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| T |
12120768 |
ggtgcttgttatcagtccctcatgcccattattttaaacttttataaataatgcttatcctctatgcatacacttcat |
12120845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 16895236 - 16895281
Alignment:
| Q |
25 |
aagaggagtgctatgaacattctctttctcacattctctctaacac |
70 |
Q |
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| T |
16895236 |
aagagaagtgctatgaacactctttttctaacattctctctaacac |
16895281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 43077836 - 43077784
Alignment:
| Q |
319 |
tcatgcccattattttaaacttttataaataatgcttatcctctatgcataca |
371 |
Q |
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|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
43077836 |
tcatgctcattatttttaacttttgtaaataatgtttatcctctatgcataca |
43077784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 24886034 - 24886077
Alignment:
| Q |
27 |
gaggagtgctatgaacattctctttctcacattctctctaacac |
70 |
Q |
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| T |
24886034 |
gaggagtgctatggacattctctttctaacactctctctaacac |
24886077 |
T |
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