View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_17 (Length: 373)
Name: NF20074_low_17
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 357
Target Start/End: Complemental strand, 37950218 - 37949893
Alignment:
| Q |
32 |
acattctattttatggattttgaagtttgctgtatcatcatgcatannnnnnngacaaagtatcatcatgcatatgttaacttgcnnnnnnnncttttcc |
131 |
Q |
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| T |
37950218 |
acattctattttatggattttgaagtttgctgtatcatcatgcatatttttttgacaaagtatcatcatgcatatgttaacttgcttttttttcttttcc |
37950119 |
T |
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| Q |
132 |
cactactacagtttcctttatttgttacgatttggaccccannnnnnnnnagaatcatttgagtaaatagaatctcaatattccaagtttatatgtcaat |
231 |
Q |
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| T |
37950118 |
cactactacagtttcctttatttgttacgattttgaccccatttttttttagaatcatttgagtaaatagaatctcaatattccaagtttatatgtcaat |
37950019 |
T |
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| Q |
232 |
gttttgacttttgaataattattgttacaactataattataattgaacctcgtatcattgaattaagttggtgcatgcatgcatatagagttgtaaaact |
331 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37950018 |
gttttgacttttgaataattattgttacaattataattataattgaacctcgtatcattgaattaagttggtgcatgcatgcatatagagttgtaaaact |
37949919 |
T |
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| Q |
332 |
ataaacattttgcttcatcaacccag |
357 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37949918 |
ataaacattttgcttcatcaacccag |
37949893 |
T |
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