View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_21 (Length: 325)
Name: NF20074_low_21
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_21 |
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| [»] scaffold1449 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 23804815 - 23804642
Alignment:
| Q |
11 |
aagcaaagggtaaatgattccatcatgaaagtgaataagtacacattaccatcatcaccataaaataattcaatccaaaaagctctgaaaagcatggcca |
110 |
Q |
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| T |
23804815 |
aagcaaagggtaaatgattccatcatgaaagtgaataagtacacattaccatcatcaccataaaataattcaatccaaaaagctctgaaaagcatggcca |
23804716 |
T |
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| Q |
111 |
tcttcaattannnnnnnncctaatctttttataagttcctttatatacccttttcataattcc-ttaataatat |
183 |
Q |
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| T |
23804715 |
tcttcaattatttttattcctaatctttttataagttcctttacgtacccttttcataattcctttaataatat |
23804642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 23804477 - 23804431
Alignment:
| Q |
253 |
acatatacttacatcaaattatataa-tttatcaaattattaacggt |
298 |
Q |
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| T |
23804477 |
acatataattacattaaattatataattttatcaaattattaacggt |
23804431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 17070944 - 17071000
Alignment:
| Q |
246 |
caccgatacatatacttacatcaaattatataatttatcaaattattaacggtgtcg |
302 |
Q |
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| T |
17070944 |
caccaatatatataattacatcgaattatataattttttaaattattaacggtgtcg |
17071000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 17087952 - 17087999
Alignment:
| Q |
255 |
atatacttacatcaaattatataatttatcaaattattaacggtgtcg |
302 |
Q |
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| T |
17087952 |
atataattacatcgaattatataattttttaaattattaacggtgtcg |
17087999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1449 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1449
Description:
Target: scaffold1449; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 1278 - 1325
Alignment:
| Q |
255 |
atatacttacatcaaattatataatttatcaaattattaacggtgtcg |
302 |
Q |
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| T |
1278 |
atataattacatcgaattatataattttttaaattattaacggtgtcg |
1325 |
T |
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