View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_27 (Length: 300)
Name: NF20074_low_27
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 42659907 - 42659636
Alignment:
| Q |
19 |
ctgtttaatttgtacaacctctattttactatatttgtgtgttttgcacgttacatgtttgataaaatgcgtgtatgaaatggtgatagtgttttaatga |
118 |
Q |
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| T |
42659907 |
ctgtttaatttgtacaacctctattttactatatttgtgtgttttgcacgttacatgtttgataaaatgcgtgtatgaaatggtgatagtgttttaatga |
42659808 |
T |
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| Q |
119 |
atttcacgcttttccctaattctgtagttgaaagaagccatttttgtgtgatcaatcaatgactacaattcagagtcaggctggaaaagaaagttctaca |
218 |
Q |
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| T |
42659807 |
atttcacgcttttccctaattctgtagttgaaagaagccatttttgtgtgatcaatcaatgactacaattcagagtcaggctggaaaagaaagttctaca |
42659708 |
T |
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| Q |
219 |
gttgaaaaaacagcttccactttcaaaagatggggcagaaaaggcccttttcttagatatggccttcctatg |
290 |
Q |
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| T |
42659707 |
gttgaaaaaacagcttccactttcaaaagatggggcagaaaaggcccttttcttagatatggccttcctatg |
42659636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 41134065 - 41133948
Alignment:
| Q |
19 |
ctgtttaatttgtacaacctctattttactatatttgtgtgttttgcacgttacatgtttgataaaatgcgtgtatgaaatggtgatagtgttttaatga |
118 |
Q |
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|||||||||||||| ||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
41134065 |
ctgtttaatttgtataacctctattttattctatttgtgtgtcttgcatgttacatgtttgataaaatgcgtgtatgaaatgggcatagtgtttcattga |
41133966 |
T |
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| Q |
119 |
atttcacgcttttcccta |
136 |
Q |
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| T |
41133965 |
attttatgctttttccta |
41133948 |
T |
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