View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_29 (Length: 285)
Name: NF20074_low_29
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 51268500 - 51268766
Alignment:
| Q |
1 |
cataacttggctattgattctccaatcaatcgtaacttcatttccatggctttcacagcctcgccaactataataagataccccatttcaaagcaaaata |
100 |
Q |
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| T |
51268500 |
catatcttggctcttgtttctccaatcaatagtaacttcatttccatggctttcacagcctcgccagctataataagaaaccccatttcaaagcaaaata |
51268599 |
T |
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| Q |
101 |
tggttgtttgtgacatgcttgataacacttgtaggaacaagttttcatttcgaaacaagggcatctataaaggccaacatgatcttcgagatcatttgac |
200 |
Q |
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| T |
51268600 |
tggttgtttgtgacatgcttgataacacttgtaggaaaaagttttcatttcgaaacaagggcatctataaaggccaacataatcttcgagatcatttgac |
51268699 |
T |
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| Q |
201 |
cgtcacaaatgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaacgttcagag |
267 |
Q |
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| T |
51268700 |
cgtcacaaatgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaacgttcagag |
51268766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 23306550 - 23306808
Alignment:
| Q |
9 |
ggctattgattctccaatcaatcgtaacttcatttccatggctttcacagcctcgccaactataataagataccccatttcaaagcaaaatatggttgtt |
108 |
Q |
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| T |
23306550 |
ggctcttgtttctccaatcaatagtaatttcatttccatggctttcacagcctcaccagctctaataagaaaccccatttcgaagcaaaatgtggttgtt |
23306649 |
T |
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| Q |
109 |
tgtgacatgcttgataacacttgtaggaacaagttttcatttcgaaacaagggcatctataaaggccaacatgatcttcgagatcatttgaccgtcacaa |
208 |
Q |
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| T |
23306650 |
tgtgatatgcttgataacacttgtagggacaagttttcatttcgaaacaagggcatctataaaggccaacgtaatcttcaagatcatttgaccgtcgcaa |
23306749 |
T |
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| Q |
209 |
atgttgttagtccatcgcgtgtgattgctccacctccaccaccggagaaacgttcagag |
267 |
Q |
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||| ||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
23306750 |
atgctgtgagtccatcgtgtgtgattgttccacctcaaccaccggagaaacgttcagag |
23306808 |
T |
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