View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_34 (Length: 271)
Name: NF20074_low_34
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 54330025 - 54329781
Alignment:
| Q |
18 |
tcttgttcttttctacattccaacaacttcctctgcgtaggtaatttcatttcttannnnnnncttcatcaccctccaatttgtatattcattcataatc |
117 |
Q |
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| T |
54330025 |
tcttgttcttttctacattccaacaacttcctctgcgtaggtaatttcatttcttatttttttcttcatcaccctccaatttgtatattcattcataatc |
54329926 |
T |
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| Q |
118 |
ataggattttatctattaatttatttatgtttggaaaaa-taaaaacaatacaattggaaaggtcgatttggtttttgattacatttccttgttacaaaa |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
54329925 |
ataggattttatctatttatttatttatgtttggaaaaaataaaaacaatacaattggaagggtcgatttggttcttgattacatttccttgttacaaaa |
54329826 |
T |
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| Q |
217 |
gcgttaccaagtcttatatggttaggtactaggtcgctctctgtg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54329825 |
gcgttaccaagtcttatatggttaggtactaggtcgctgtctgtg |
54329781 |
T |
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