View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20074_low_39 (Length: 249)

Name: NF20074_low_39
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20074_low_39
NF20074_low_39
[»] chr4 (6 HSPs)
chr4 (17-137)||(13091472-13091592)
chr4 (19-137)||(22591590-22591708)
chr4 (44-137)||(28117507-28117600)
chr4 (44-137)||(14642890-14642983)
chr4 (44-121)||(24304426-24304503)
chr4 (44-121)||(23628212-23628289)
[»] chr6 (4 HSPs)
chr6 (20-137)||(26332687-26332804)
chr6 (19-137)||(15668610-15668734)
chr6 (44-137)||(24050587-24050680)
chr6 (61-131)||(5123137-5123206)
[»] chr1 (4 HSPs)
chr1 (20-137)||(6577490-6577607)
chr1 (44-116)||(45589011-45589083)
chr1 (29-137)||(38317054-38317162)
chr1 (60-128)||(45668574-45668642)
[»] chr8 (3 HSPs)
chr8 (44-137)||(39995950-39996043)
chr8 (44-137)||(15309743-15309836)
chr8 (44-137)||(15490112-15490205)
[»] chr7 (2 HSPs)
chr7 (44-137)||(8792066-8792159)
chr7 (44-137)||(38035960-38036053)
[»] chr5 (9 HSPs)
chr5 (44-137)||(42110051-42110144)
chr5 (44-137)||(6928943-6929036)
chr5 (44-137)||(25820641-25820734)
chr5 (44-137)||(27177088-27177181)
chr5 (44-137)||(32262333-32262426)
chr5 (44-137)||(42322242-42322335)
chr5 (44-137)||(15975868-15975961)
chr5 (44-121)||(31958997-31959074)
chr5 (46-121)||(39782341-39782416)
[»] chr2 (1 HSPs)
chr2 (44-137)||(7232391-7232484)
[»] scaffold0237 (1 HSPs)
scaffold0237 (44-137)||(6009-6102)
[»] scaffold0005 (1 HSPs)
scaffold0005 (44-137)||(174309-174402)
[»] chr3 (3 HSPs)
chr3 (29-137)||(3591736-3591844)
chr3 (29-137)||(9785947-9786055)
chr3 (44-121)||(12997406-12997483)
[»] scaffold0481 (1 HSPs)
scaffold0481 (44-94)||(6196-6246)
[»] scaffold0198 (1 HSPs)
scaffold0198 (44-137)||(15866-15966)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 13091592 - 13091472
Alignment:
Q  17 gtgatttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttga 116  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13091592 gtgatttggtcccatttgttgaattcctcatcttgaacaccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcttgtttga 13091493  T
Q  117 ttagtggaaatggtctcatat 137  Q
    |||||||||||||||||||||    
T  13091492 ttagtggaaatggtctcatat 13091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 22591708 - 22591590
Alignment:
Q  19 gatttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgatt 118  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| || ||||||    
T  22591708 gatttggtcccatttgttgaactcctcatcttgaacgccacatattcgaatgaagttacgaagtgttgttgttgcaactatgatcttttcttgcttgatt 22591609  T
Q  119 agtggaaatggtctcatat 137  Q
    |||||||||||||||||||    
T  22591608 agtggaaatggtctcatat 22591590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 28117507 - 28117600
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  28117507 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 28117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 14642983 - 14642890
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  14642983 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 14642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 24304426 - 24304503
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 121  Q
    ||||||| ||| ||||| |||||||||||||| || |||| ||||| |||||||||||||||||  ||||||| ||||    
T  24304426 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgctgcaactatgatcttttgttgtttgaatagt 24304503  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 23628289 - 23628212
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 121  Q
    ||||||| ||| ||||| ||| |||||||||| || |||| ||||||| |||||||||||||||  ||||||| ||||    
T  23628289 tcatcttcaactccacacatttgaataaagttgtggagtgttgttgttacaactatgatcttttgttgtttgaatagt 23628212  T

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Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 26332687 - 26332804
Alignment:
Q  20 atttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgatta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  26332687 atttgatcccatttgttgaattcctcatcttgaacgccacatattcgaatgaagttatgaagtgttgttgttgcaactatgatcttttcttgtttgatta 26332786  T
Q  120 gtggaaatggtctcatat 137  Q
    ||||||||||||||||||    
T  26332787 gtggaaatggtctcatat 26332804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 15668610 - 15668734
Alignment:
Q  19 gatttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtg------ctgttgttgcaactatgatcttttcctgt 112  Q
    |||||| || ||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||      |||||||| ||||||| |||||||| |||    
T  15668610 gatttggtcacatttgttgaattcctcatcttgagtgccacatattcgaatgaagttatgacgtgttgttgctgttgttacaactattatcttttcttgt 15668709  T
Q  113 ttgattagtggaaatggtctcatat 137  Q
    |||||||||||||||||||||||||    
T  15668710 ttgattagtggaaatggtctcatat 15668734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 24050587 - 24050680
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||    
T  24050587 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgtaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 24050680  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 5123206 - 5123137
Alignment:
Q  61 tattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtc 131  Q
    ||||| |||||||||| |||| | |||||||||||||||||||||||   |||||||||||| ||||||||    
T  5123206 tattcaaataaagttacgaag-gttgttgttgcaactatgatcttttgtagtttgattagtgaaaatggtc 5123137  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 6577490 - 6577607
Alignment:
Q  20 atttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgatta 119  Q
    ||||| ||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  6577490 atttggtccaatttgttgaactcctcatcttgaacaccacatattcgaatgaagttatgaagtgctattgttgcaactatgatcttttcttgtttgatta 6577589  T
Q  120 gtggaaatggtctcatat 137  Q
    |||| |||||||||||||    
T  6577590 gtgggaatggtctcatat 6577607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 45589083 - 45589011
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttga 116  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  |||||||    
T  45589083 tcatcttcaactccacacattcgaataaagttgtggagtgatgttgttgcaactatgatcttttgttgtttga 45589011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 38317054 - 38317162
Alignment:
Q  29 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 128  Q
    |||||||| ||||| ||||||| || | ||||  |||  ||||| |||||||||| |||| |||||||| |||||||||  | ||| ||||||||||||     
T  38317054 catttgttaaattcttcatcttcaatgtcacactttcacataaaattatgaagtgttgttattgcaactttgatcttttgttatttcattagtggaaatt 38317153  T
Q  129 gtctcatat 137  Q
    |||||||||    
T  38317154 gtctcatat 38317162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 45668642 - 45668574
Alignment:
Q  60 atattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 128  Q
    ||||| |||| ||||||| ||||| | |||| ||||||||||||||||  ||||||||||||| |||||    
T  45668642 atattggaattaagttataaagtgttattgtcgcaactatgatcttttattgtttgattagtgaaaatg 45668574  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 39996043 - 39995950
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  39996043 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtggaaatggtcgcatat 39995950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 15309836 - 15309743
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||  | || | ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  15309836 tcatcttcaactccacacattcgaataaaaatgtggactgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 15309743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 15490205 - 15490112
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||  | || | ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  15490205 tcatcttcaactccacacattcgaataaaaatgtggactgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 15490112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 8792159 - 8792066
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  8792159 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 8792066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 38036053 - 38035960
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  38036053 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 38035960  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 42110144 - 42110051
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  42110144 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 42110051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 6928943 - 6929036
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||    
T  6928943 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgtaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 6929036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 25820734 - 25820641
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||||| |||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  25820734 tcatcttcaactccacacattcgaataaagttgtggagtgcttttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcacatat 25820641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 27177088 - 27177181
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| || ||||| |||||    
T  27177088 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaattggtcgcatat 27177181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 32262333 - 32262426
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  32262333 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 32262426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 42322335 - 42322242
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||||||||||| |||||||||| ||||  ||||||||||||| |||||||| |||||    
T  42322335 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttccaactatgatattttgttgtttgattagtgaaaatggtcgcatat 42322242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 15975961 - 15975868
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| | ||| ||| |||||||||| || |||| |||||||||||||||||||||||  | ||||||||||| |||||||| |||||    
T  15975961 tcatcttcaactctacacatttgaataaagttgtggagtgttgttgttgcaactatgatcttttgttatttgattagtgaaaatggtcgcatat 15975868  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 31958997 - 31959074
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 121  Q
    ||||||| ||| ||||| |||||||||||||| || |||| | ||||||||||||||| | |||  ||||||||||||    
T  31958997 tcatcttcaactccacacattcgaataaagttgtggagtgttattgttgcaactatgaccatttgttgtttgattagt 31959074  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 39782416 - 39782341
Alignment:
Q  46 atcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 121  Q
    ||||| ||| ||||| ||||||||||| || || | |  |||||||||||||||||||||||  ||||||||||||    
T  39782416 atcttcaactccacacattcgaataaaattgtggactattgttgttgcaactatgatcttttgttgtttgattagt 39782341  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 7232484 - 7232391
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  7232484 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 7232391  T

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Target: scaffold0237 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 6102 - 6009
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  6102 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 6009  T

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Target: scaffold0005 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 174309 - 174402
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 137  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  174309 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 174402  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 3591844 - 3591736
Alignment:
Q  29 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 128  Q
    |||||||| ||||| ||||||| ||  |||||  |||||||||| ||||||||||| ||||||||||||||||||||||  ||||| || | ||||||||    
T  3591844 catttgttaaattcttcatcttcaataccacactttcgaataaaattatgaagtgccgttgttgcaactatgatcttttgttgtttcatcaatggaaatg 3591745  T
Q  129 gtctcatat 137  Q
    |||||||||    
T  3591744 gtctcatat 3591736  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 9785947 - 9786055
Alignment:
Q  29 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 128  Q
    |||||||| ||||| ||||||| ||  |||||  |||||||||| ||||||||||| ||||||||||||||||||||||  ||||| || | ||||||||    
T  9785947 catttgttaaattcttcatcttcaataccacactttcgaataaaattatgaagtgccgttgttgcaactatgatcttttgttgtttcatcaatggaaatg 9786046  T
Q  129 gtctcatat 137  Q
    |||||||||    
T  9786047 gtctcatat 9786055  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 12997406 - 12997483
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 121  Q
    ||||||| ||| |||||||||| ||||||||| || |||| |||||||||||||||||| ||||  ||||||||||||    
T  12997406 tcatcttcaactccacatattctaataaagttgtggagtgttgttgttgcaactatgattttttgttgtttgattagt 12997483  T

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Target: scaffold0481 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 6246 - 6196
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgca 94  Q
    ||||||| ||| ||||| |||||||||||||| || |||||||||||||||    
T  6246 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgca 6196  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 15866 - 15966
Alignment:
Q  44 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttg-------ttgcaactatgatcttttcctgtttgattagtggaaatggtctcata 136  Q
    |||||||||||  |||| |||||||||||||| || |||| |||||       ||||||||||||||||||  |||| |||||||| |||||||| ||||    
T  15866 tcatcttgaacttcacacattcgaataaagttgtggagtgttgttgttgcaacttgcaactatgatcttttgttgttcgattagtgaaaatggtcgcata 15965  T
Q  137 t 137  Q
    |    
T  15966 t 15966  T

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