View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20074_low_4 (Length: 543)
Name: NF20074_low_4
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Original strand, 30958870 - 30959387
Alignment:
| Q |
13 |
gattattctcaataataaatgttgtaactttacaaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958870 |
gattattctcaataataaatgttgtaactttacaaacatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattgg |
30958969 |
T |
|
| Q |
113 |
ttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaacta-gggcctttgataattttcaggtagataatgaatattgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958970 |
ttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactaagggcctttgataattttcaggtagataatgaatattgat |
30959069 |
T |
|
| Q |
212 |
ttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959070 |
ttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaac |
30959169 |
T |
|
| Q |
312 |
atttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagtagcgcttggtctactag |
411 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30959170 |
atttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagcagcgcttggtctactag |
30959269 |
T |
|
| Q |
412 |
ggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaatnnnnnnngagtctcaagttcatttctgtcaaaaataattgtta |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959270 |
ggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaataaaaaaagagtctcaagttcatttctgtcaaaaataattgtta |
30959369 |
T |
|
| Q |
512 |
atatttgtgcttgttatt |
529 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30959370 |
atatttgtgcttgttatt |
30959387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 30955067 - 30955172
Alignment:
| Q |
45 |
caaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatg |
144 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
30955067 |
caaatatcttgtcttatttatctgcttaatttgt---cacagaaaatttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtg |
30955163 |
T |
|
| Q |
145 |
aaggagttt |
153 |
Q |
| |
|
||||||||| |
|
|
| T |
30955164 |
aaggagttt |
30955172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
270 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
369 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
|
|
| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
370 |
ctcagtataag |
380 |
Q |
| |
|
||||||||||| |
|
|
| T |
11688839 |
ctcagtataag |
11688829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 11689147 - 11689036
Alignment:
| Q |
83 |
acagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttga |
182 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || ||| || ||||||||| || | ||||| || |
|
|
| T |
11689147 |
acagtaagcttcctctttcaattatattggttggtgttggagatggaccatgggacatgatgaaagaatttgacgataatattccatctcgtgccttcga |
11689048 |
T |
|
| Q |
183 |
taattttcaggt |
194 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
11689047 |
taatttccaggt |
11689036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 7474121 - 7474234
Alignment:
| Q |
82 |
cacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttg |
181 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | |||||||| | |
|
|
| T |
7474121 |
cacagtaaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttgatgacaatatgccagccagggccttcg |
7474220 |
T |
|
| Q |
182 |
ataattttcaggta |
195 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7474221 |
ataattttcaggta |
7474234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
273 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
372 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
|
|
| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
|
| Q |
373 |
agtataag |
380 |
Q |
| |
|
|||||||| |
|
|
| T |
7474436 |
agtataag |
7474443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 44131152 - 44131205
Alignment:
| Q |
93 |
tcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
146 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaa |
44131205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University