View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20074_low_42 (Length: 236)
Name: NF20074_low_42
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20074_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 38401608 - 38401405
Alignment:
| Q |
17 |
atactctagttttatagatggtactctcagcaactaagtacaaaactcctttttatcactatttggagtattaaag-tattttgaccacttggccaaaaa |
115 |
Q |
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| T |
38401608 |
atactctagttt-atagattgtactctcagcaagtaagtacaaaactcctttttatcactatttggagtattaaaaatattttgaccacttgaccaaaaa |
38401510 |
T |
|
| Q |
116 |
tatattttgaccataattttgaaaaatctagaaaaatcaatggttgtgatgcctgtgtcgacgtataccnnnnnnnnnattggtccacatgtgtgatgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
38401509 |
tatattttgaccataattttgaaaaatctagaaaaatcaatggttgtgatgcctgtgtcgacgtatacactttttttaattggtccacatgtgtgatgga |
38401410 |
T |
|
| Q |
216 |
gtgta |
220 |
Q |
| |
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||||| |
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| T |
38401409 |
gtgta |
38401405 |
T |
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