View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20074_low_6 (Length: 490)

Name: NF20074_low_6
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20074_low_6
NF20074_low_6
[»] chr4 (10 HSPs)
chr4 (1-481)||(49031776-49032253)
chr4 (170-233)||(29467598-29467661)
chr4 (168-226)||(29375934-29375992)
chr4 (169-217)||(23819121-23819169)
chr4 (169-243)||(11264333-11264407)
chr4 (169-226)||(27123333-27123390)
chr4 (169-217)||(1137744-1137792)
chr4 (170-226)||(3176085-3176141)
chr4 (168-216)||(23815385-23815433)
chr4 (170-218)||(35734193-35734241)
[»] chr5 (5 HSPs)
chr5 (123-238)||(41957420-41957534)
chr5 (169-233)||(26004971-26005035)
chr5 (170-238)||(10272400-10272468)
chr5 (174-234)||(10391379-10391439)
chr5 (169-209)||(35963273-35963313)
[»] chr3 (17 HSPs)
chr3 (168-255)||(37273165-37273252)
chr3 (123-238)||(1217769-1217883)
chr3 (169-234)||(43115088-43115153)
chr3 (169-228)||(31010434-31010493)
chr3 (123-238)||(36646351-36646465)
chr3 (169-243)||(11039303-11039377)
chr3 (169-226)||(20192587-20192644)
chr3 (169-226)||(29771870-29771927)
chr3 (129-237)||(39602180-39602287)
chr3 (169-217)||(42745070-42745118)
chr3 (170-226)||(49465917-49465973)
chr3 (170-252)||(3467343-3467425)
chr3 (169-211)||(36445857-36445899)
chr3 (172-217)||(36200131-36200176)
chr3 (143-243)||(1809983-1810083)
chr3 (170-234)||(26542570-26542634)
chr3 (176-224)||(41724251-41724299)
[»] chr7 (9 HSPs)
chr7 (169-252)||(48157075-48157158)
chr7 (169-233)||(12234863-12234927)
chr7 (175-224)||(11721222-11721271)
chr7 (169-226)||(42281495-42281552)
chr7 (119-218)||(3468597-3468695)
chr7 (169-228)||(27626102-27626161)
chr7 (146-224)||(45078287-45078365)
chr7 (170-223)||(2767162-2767215)
chr7 (169-226)||(4966188-4966245)
[»] chr2 (14 HSPs)
chr2 (124-211)||(10285848-10285934)
chr2 (169-228)||(34652015-34652074)
chr2 (169-243)||(7283028-7283102)
chr2 (168-226)||(18884898-18884956)
chr2 (176-226)||(30538154-30538204)
chr2 (169-234)||(11063520-11063585)
chr2 (169-217)||(41817200-41817248)
chr2 (169-226)||(1830077-1830134)
chr2 (111-208)||(32694187-32694283)
chr2 (169-234)||(32821841-32821906)
chr2 (170-223)||(41042006-41042059)
chr2 (169-226)||(43065431-43065488)
chr2 (175-231)||(9878658-9878714)
chr2 (170-218)||(43141904-43141952)
[»] chr8 (8 HSPs)
chr8 (176-226)||(9540977-9541027)
chr8 (169-255)||(13000376-13000462)
chr8 (171-238)||(7712017-7712084)
chr8 (168-226)||(9835881-9835939)
chr8 (170-211)||(25869262-25869303)
chr8 (170-255)||(30191093-30191178)
chr8 (172-224)||(12361227-12361279)
chr8 (30-62)||(14958157-14958189)
[»] chr1 (12 HSPs)
chr1 (168-226)||(24502809-24502867)
chr1 (143-217)||(31118049-31118123)
chr1 (169-226)||(30259467-30259524)
chr1 (175-238)||(47261547-47261610)
chr1 (125-210)||(25479570-25479654)
chr1 (169-218)||(27140510-27140559)
chr1 (169-218)||(28689441-28689490)
chr1 (125-226)||(39270406-39270506)
chr1 (199-255)||(4549493-4549549)
chr1 (171-211)||(12477283-12477323)
chr1 (170-218)||(15579515-15579563)
chr1 (122-226)||(17420189-17420292)
[»] chr6 (12 HSPs)
chr6 (169-217)||(3528835-3528883)
chr6 (170-218)||(34939777-34939825)
chr6 (173-243)||(3775092-3775162)
chr6 (169-219)||(7785732-7785782)
chr6 (169-226)||(2460132-2460189)
chr6 (169-226)||(4420675-4420732)
chr6 (169-226)||(9027610-9027667)
chr6 (169-218)||(9667974-9668023)
chr6 (176-253)||(10616496-10616572)
chr6 (123-211)||(281844-281931)
chr6 (169-209)||(27909636-27909676)
chr6 (170-226)||(34939546-34939602)
[»] scaffold0311 (1 HSPs)
scaffold0311 (170-228)||(10596-10654)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 49032253 - 49031776
Alignment:
Q  1 aacaaccatgttccattatttgcgatttctttaatcttttgttactagttgttgttttaacataaaccttatacaatttttcttgtacctttacacatca 100  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  49032253 aacaaccatgttcaattgtttgcgatttctttaatcttttgttactagttgtt---ttaacataaaccttatacaatttttcttgtacctttacacatca 49032157  T
Q  101 cataatatgcaaaatcacactattttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49032156 cataatatgcaaaatcacactattttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatgga 49032057  T
Q  201 catgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgcattacgcatatgaataagctcatataacccaattcaaacaagtgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49032056 catgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgcattacgcatatgaataagctcatataacccaattcaaacaagtgc 49031957  T
Q  301 tgcgacaaaatgaaatataaggaaaaggctcttacagcagcaccagagcgaacagagacgaggagaggttttgaaggattcccaagaaaggcccccattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49031956 tgcgacaaaatgaaatataaggaaaaggctcttacagcagcaccagagcgaacagagacgaggagaggttttgaaggattcccaagaaaggcccccattt 49031857  T
Q  401 cattttgcacaaaattaaggccttcaagtatctcctcccacaaaccatttggtaggttctttacattttcttgatattctt 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49031856 cattttgcacaaaattaaggccttcaagtatctcctcccacaaaccatttggtaggttctttacattttcttgatattctt 49031776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 29467661 - 29467598
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaa 233  Q
    ||||||||||||| ||||||||  | ||||||||||||||||  ||||||||||||||| ||||    
T  29467661 ttatggaaataagctgaaaacagcttatggacatgtcataagccgtttctataagctttaccaa 29467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 29375934 - 29375992
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||||| ||||||||||  |||||| ||||||||| |||||| |||||||    
T  29375934 acttatggaaataagttgaaaacaaaatatggacctgtcataagctgtttccataagct 29375992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 23819121 - 23819169
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    ||||| |||||||||||||||||| | |||||||||||||||| |||||    
T  23819121 cttatagaaataagatgaaaacaacttatggacatgtcataagctgttt 23819169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 11264333 - 11264407
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcac 243  Q
    |||||||||||||| ||||||||  | |||||||||||||||| || ||||||| ||| | ||||| ||| ||||    
T  11264333 cttatggaaataagttgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtctcac 11264407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 27123390 - 27123333
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| ||||||||| | |  ||||||||||||| |||||| |||||||    
T  27123390 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagct 27123333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 1137744 - 1137792
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    |||||||||||||  ||||||||| | ||| ||||||||||||||||||    
T  1137744 cttatggaaataaactgaaaacaacttatgaacatgtcataagatgttt 1137792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 3176141 - 3176085
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||| ||||||||| | || |||||| ||||||||||||  |||||||    
T  3176141 ttatggaaataagctgaaaacaacttatagacatgacataagatgttttcataagct 3176085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 23815385 - 23815433
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtt 216  Q
    |||||||||||||||||||| |||||| ||  |||||||||||| ||||    
T  23815385 acttatggaaataagatgaatacaaattatcaacatgtcataaggtgtt 23815433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 35734193 - 35734241
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    ||||||||||||| |||| |||| |||||||||||| ||||| ||||||    
T  35734193 ttatggaaataagctgaacacaattaatggacatgtaataagttgtttc 35734241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 41957534 - 41957420
Alignment:
Q  123 ttttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctata 222  Q
    ||||||| |||| |||||||| |||||||||||||| | | |   ||||||| ||||||||||||||||| | |||||||||||||||| ||||||  ||    
T  41957534 ttttcatgtaagttataagct-gttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgta 41957436  T
Q  223 agcttttccaaatagt 238  Q
    |||| |||||||||||    
T  41957435 agctcttccaaatagt 41957420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 26005035 - 26004971
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaa 233  Q
    |||||||||||||| ||||||||| ||| | ||||| |||||| ||||||| |||| ||||||||    
T  26005035 cttatggaaataaggtgaaaacaattaaggaacatgccataagctgtttctgtaagtttttccaa 26004971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 10272468 - 10272400
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagt 238  Q
    ||||| ||||||| ||||||||| | |  ||||||||||||| |||||||||||||  | |||||||||    
T  10272468 ttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataagcactcccaaatagt 10272400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 10391379 - 10391439
Alignment:
Q  174 ggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaa 234  Q
    ||||||||| ||||||||| |||| ||||||||||||  ||||| ||||| || |||||||    
T  10391379 ggaaataagttgaaaacaactaatagacatgtcataaagtgtttttataaactcttccaaa 10391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 35963273 - 35963313
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcata 209  Q
    |||||||||||||| ||||||||| | ||||||||||||||    
T  35963273 cttatggaaataagctgaaaacaacttatggacatgtcata 35963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 37273165 - 37273252
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgc 255  Q
    ||||||||||||||| ||||||||| | |||||||||||||||| |||||| ||||||| | ||||| ||| |||||| |||||||||    
T  37273165 acttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgc 37273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 1217883 - 1217769
Alignment:
Q  123 ttttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctata 222  Q
    ||||||| |||| |||||||| |||||||||||||| | | |   ||||||| || |||||||||||||| | |||||||||||||||| ||||||  ||    
T  1217883 ttttcatgtaagttataagct-gttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgta 1217785  T
Q  223 agcttttccaaatagt 238  Q
    |||| |||||||||||    
T  1217784 agctcttccaaatagt 1217769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 43115088 - 43115153
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaa 234  Q
    |||||||||||||| ||||||||| | |||||||||||||||| |||||| |||| || |||||||    
T  43115088 cttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaa 43115153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 31010434 - 31010493
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttt 228  Q
    ||||||||| |||| ||||||||  | |||||||||||||||| ||||||||||||||||    
T  31010434 cttatggaattaagctgaaaacagcttatggacatgtcataagttgtttctataagcttt 31010493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 36646465 - 36646351
Alignment:
Q  123 ttttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctata 222  Q
    |||||||||||| ||||| ||||||||||||||||| | |||     |||| |||||||||||||||||  | ||||||||| ||||||  ||||| |||    
T  36646465 ttttcatataagttataa-cttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccata 36646367  T
Q  223 agcttttccaaatagt 238  Q
    |||| | |||||||||    
T  36646366 agctctcccaaatagt 36646351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 11039377 - 11039303
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcac 243  Q
    |||||||| ||||| ||||||||| | ||||||||||||||| ||||||| ||||||| || |||| ||| ||||    
T  11039377 cttatggagataagctgaaaacaacttatggacatgtcataatatgtttccataagctctttcaaacagtctcac 11039303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 20192644 - 20192587
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||| || ||||||||  | |||||||||||||||| ||||||||||||||    
T  20192644 cttatggaaatgagttgaaaacagcttatggacatgtcataagctgtttctataagct 20192587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 29771870 - 29771927
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| ||||||||| | ||||||||||| |||| ||||||| ||||||    
T  29771870 cttatggaaataagttgaaaacaacttatggacatgtcctaagttgtttctttaagct 29771927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 39602287 - 39602180
Alignment:
Q  129 tataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttt 228  Q
    |||||| |||||||| |||||||||||||| | | |   ||||||| ||||||| ||||||||| | ||| |||||||||||| ||| |  ||||||| |    
T  39602287 tataagttataagct-gttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctct 39602189  T
Q  229 tccaaatag 237  Q
    |||||||||    
T  39602188 tccaaatag 39602180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 42745070 - 42745118
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    |||||||||||||||||||||||| | ||| |||||||||||| |||||    
T  42745070 cttatggaaataagatgaaaacaacttatgaacatgtcataagttgttt 42745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 49465973 - 49465917
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||| |||||| |  | |||||||||||||||| ||||||||||||||    
T  49465973 ttatggaaataagttgaaaatagttcatggacatgtcataagttgtttctataagct 49465917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 3467425 - 3467343
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgctta 252  Q
    |||||||||||||||| |||||| | |||| ||||||||||| |||||  ||| ||| | ||||||| | |||||| ||||||    
T  3467425 ttatggaaataagatgcaaacaacttatggccatgtcataagctgttttcatatgctgtaccaaataatctcaccagtgctta 3467343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 36445857 - 36445899
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataag 211  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||    
T  36445857 cttatgaaaataagatgaaaacaactaatgaacatgtcataag 36445899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 36200131 - 36200176
Alignment:
Q  172 atggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    ||||||||||| ||||||||| | |||||||||||||||| |||||    
T  36200131 atggaaataagctgaaaacaacttatggacatgtcataagttgttt 36200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 1809983 - 1810083
Alignment:
Q  143 ttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtca 242  Q
    |||||||||||||||| | ||    |||||| ||||||||  |||||||| | |||||||||||||||| ||||||  |||||| |  |||||||| |||    
T  1809983 ttgttttcataagctatcctacgaaacttatagaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatagtctca 1810082  T
Q  243 c 243  Q
    |    
T  1810083 c 1810083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 26542570 - 26542634
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaa 234  Q
    ||||||||||||| ||||||||| | || ||||| ||||||| ||||||  |||||| |||||||    
T  26542570 ttatggaaataagttgaaaacaagttatagacatatcataagttgtttcagtaagctcttccaaa 26542634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 41724251 - 41724299
Alignment:
Q  176 aaataagatgaaaacaaataatggacatgtcataagatgtttctataag 224  Q
    ||||||| ||||||||| | |||||||||||||||| |||||| |||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 48157158 - 48157075
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgctta 252  Q
    |||||||||||||| ||||||||  | ||||||||| |||||| |||||||||||||| | ||||| ||| |||| ||||||||    
T  48157158 cttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgctta 48157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 12234927 - 12234863
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaa 233  Q
    |||||||||||||| ||||||||  | || ||||||||||||| |||||||||||||| ||||||    
T  12234927 cttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataagctattccaa 12234863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 11721271 - 11721222
Alignment:
Q  175 gaaataagatgaaaacaaataatggacatgtcataagatgtttctataag 224  Q
    |||||||||||||||||||| || ||||||||||||| | ||||||||||    
T  11721271 gaaataagatgaaaacaaattatcgacatgtcataagctatttctataag 11721222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 42281552 - 42281495
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||| |||||||| ||||||||||| ||  |||||||||||| ||||||||||||||    
T  42281552 cttatagaaataagctgaaaacaaattatttacatgtcataagctgtttctataagct 42281495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 3468597 - 3468695
Alignment:
Q  119 actattttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    ||||||||| |||||| ||||||||| ||||||||| ||| | |||   |||| |||||||||| || |||||| | ||||||||||||| || ||||||    
T  3468597 actattttcgtataagttataagctt-ttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttc 3468695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 27626161 - 27626102
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttt 228  Q
    |||||||||||||| | ||||||  | |||||||||||||||| |||||| |||||||||    
T  27626161 cttatggaaataagtttaaaacagtttatggacatgtcataagctgtttccataagcttt 27626102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 45078287 - 45078365
Alignment:
Q  146 ttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataag 224  Q
    ||||||||||||| ||  | | |||| |||||||||| ||||||||  | |||||||||||||||| | ||||||||||    
T  45078287 ttttcataagctatcacggataacttgtggaaataagttgaaaacagcttatggacatgtcataagttatttctataag 45078365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 2767215 - 2767162
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataa 223  Q
    ||||||||||||| ||||||||  | |||||||||| ||||| |||||||||||    
T  2767215 ttatggaaataagttgaaaacagttgatggacatgtaataagttgtttctataa 2767162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 4966188 - 4966245
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||  ||||||||| | |||||||| |||||||  |||||||||||||    
T  4966188 cttatggaaataaactgaaaacaacttatggacatatcataagtggtttctataagct 4966245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 10285848 - 10285934
Alignment:
Q  124 tttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataag 211  Q
    ||||||||||| |||||| | |||| |||||||||||||||   ||||||||||||||| ||||||||  | ||||||||||||||||    
T  10285848 tttcatataagctataag-tcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgtcataag 10285934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 34652074 - 34652015
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttt 228  Q
    |||||||||||||| ||||||||  | |||||||||||||||| ||||||||||||||||    
T  34652074 cttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataagcttt 34652015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 7283028 - 7283102
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcac 243  Q
    |||||||| ||||||||||||||| | |||||||| ||||||| |||||| | |||||  |||||||||| ||||    
T  7283028 cttatggatataagatgaaaacaacttatggacatatcataagttgtttccaaaagctaatccaaatagtctcac 7283102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 18884898 - 18884956
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||||  ||||||||  ||||||| |||||||||| ||||||||||||||    
T  18884898 acttatggaaataatctgaaaacagctaatggaaatgtcataagctgtttctataagct 18884956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 30538204 - 30538154
Alignment:
Q  176 aaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||| ||||||||| | |||||||||||||||| ||||||||||||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcataagttgtttctataagct 30538154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 11063520 - 11063585
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaa 234  Q
    |||||| ||||||| | ||||||| | ||||||||||||||| ||||||| ||||||| |||||||    
T  11063520 cttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaa 11063585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 41817200 - 41817248
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  41817200 cttatggaaataagctgaaaacaaattatcaacatgtcataagatgttt 41817248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 1830077 - 1830134
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| |||||||     ||||||||||||||||||||||| |||||||    
T  1830077 cttatggaaataagctgaaaactccctatggacatgtcataagatgtttccataagct 1830134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 32694187 - 32694283
Alignment:
Q  111 aaaatcacactattttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcat 208  Q
    ||||||| |||||||| ||||||  |||||| |||||| ||||||||| | ||| |   || |||||||||| |||||||||  ||||||||||||||    
T  32694187 aaaatcagactatttttatataatttataag-ttgtttgcataagctatcctagatagattgtggaaataagctgaaaacaacaaatggacatgtcat 32694283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 32821841 - 32821906
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaa 234  Q
    ||||| |||||||  ||||||||  | |||||||||||||||| ||||||||||| || |||||||    
T  32821841 cttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaa 32821906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 41042059 - 41042006
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataa 223  Q
    ||||||||||||| ||||||||  | |||||||||| ||||| |||||||||||    
T  41042059 ttatggaaataagttgaaaacagctgatggacatgtaataagttgtttctataa 41042006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 43065488 - 43065431
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||| |||||||| ||||||||| | |||||||||||||||| |||||  |||||||    
T  43065488 cttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagct 43065431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 9878714 - 9878658
Alignment:
Q  175 gaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttcc 231  Q
    ||||||||  |||||||| | |||||||||||||||| |||||| ||||||| ||||    
T  9878714 gaaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctcttcc 9878658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 43141904 - 43141952
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    |||||||||||| |||||||||| | |||| ||||||||||| ||||||    
T  43141904 ttatggaaataaaatgaaaacaacttatgggcatgtcataagttgtttc 43141952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 9541027 - 9540977
Alignment:
Q  176 aaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||| |||| |||||| ||||||||||||||||||||||| |||||||    
T  9541027 aaataagctgaacacaaattatggacatgtcataagatgtttccataagct 9540977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 13000462 - 13000376
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgc 255  Q
    |||||||||||||| ||||||||| |  ||||||||||||||| |||| | |||| || || |||||||| |||| | |||||||||    
T  13000462 cttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttatgc 13000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 7712084 - 7712017
Alignment:
Q  171 tatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagt 238  Q
    |||||||||||| ||||||||  ||||||||||||||  || | |||||||||||| | |||||||||    
T  7712084 tatggaaataaggtgaaaacagctaatggacatgtcacgagctttttctataagctctcccaaatagt 7712017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 9835939 - 9835881
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||||||||||||||  | ||| |||||||||||| |||||  |||||||    
T  9835939 acttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataagct 9835881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 25869303 - 25869262
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataag 211  Q
    ||||||||||||| ||||||||| | ||||||||||||||||    
T  25869303 ttatggaaataagctgaaaacaacttatggacatgtcataag 25869262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 30191178 - 30191093
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgc 255  Q
    ||||||||||||| ||||||||| |  || |||||||||||| |||||| ||||||| | ||||| ||| | || | |||||||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgc 30191093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 12361227 - 12361279
Alignment:
Q  172 atggaaataagatgaaaacaaataatggacatgtcataagatgtttctataag 224  Q
    ||||||||||| ||||||||  | |||||||||||||||| | ||||||||||    
T  12361227 atggaaataagttgaaaacagcttatggacatgtcataagctatttctataag 12361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 14958157 - 14958189
Alignment:
Q  30 tttaatcttttgttactagttgttgttttaaca 62  Q
    ||||||||||||||||||||||||||| |||||    
T  14958157 tttaatcttttgttactagttgttgttctaaca 14958189  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 24502867 - 24502809
Alignment:
Q  168 acttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||| ||||||||| ||||||||||| || ||||||||||||| ||||||| ||||||    
T  24502867 acttacggaaataagctgaaaacaaattattgacatgtcataagttgtttctgtaagct 24502809  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 31118049 - 31118123
Alignment:
Q  143 ttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    |||||||||||||||| | |  |  ||||||||||||||| ||||||||| | ||| ||||||||||||||||||    
T  31118049 ttgttttcataagctaccctgatgaacttatggaaataagctgaaaacaactgatgaacatgtcataagatgttt 31118123  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 30259524 - 30259467
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| ||||||||| | || |||||||| |||| ||||||||||||||    
T  30259524 cttatggaaataagttgaaaacaatttattgacatgtcgtaagttgtttctataagct 30259467  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 47261547 - 47261610
Alignment:
Q  175 gaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagt 238  Q
    |||||||| ||||||| | ||||| |||||||||||| || ||||||||||| | |||||||||    
T  47261547 gaaataagctgaaaaccactaatgaacatgtcataagttgcttctataagctctcccaaatagt 47261610  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 25479570 - 25479654
Alignment:
Q  125 ttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataa 210  Q
    |||||||| | |||||| |||||||||||||||| | |||    |||||| ||||||| ||||||||| ||||| |||||||||||    
T  25479570 ttcatataggctataag-ttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataa 25479654  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 27140510 - 27140559
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    |||||| ||||||| ||||||||| | |||||||||||||||| ||||||    
T  27140510 cttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttc 27140559  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 28689490 - 28689441
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    |||||| ||||||| ||||||||| | |||||||||||||||| ||||||    
T  28689490 cttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttc 28689441  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 39270506 - 39270406
Alignment:
Q  125 ttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataag 224  Q
    |||||||||||||||||| ||||||||||||||| |||||    | |||| ||||||| ||||||||  | ||||||||| || ||| |||||  |||||    
T  39270506 ttcatataagatataagc-tgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataag 39270408  T
Q  225 ct 226  Q
    ||    
T  39270407 ct 39270406  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 4549549 - 4549493
Alignment:
Q  199 gacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttatgc 255  Q
    ||||||||||||| |||||||||||||| | ||||| ||| |||  |||||||||||    
T  4549549 gacatgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgc 4549493  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 12477323 - 12477283
Alignment:
Q  171 tatggaaataagatgaaaacaaataatggacatgtcataag 211  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  12477323 tatggaaataagctgaaaacaacttatggacatgtcataag 12477283  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 15579515 - 15579563
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    ||||||||||||| ||| ||||| | |||||||||||||||| ||||||    
T  15579515 ttatggaaataagctgagaacaacttatggacatgtcataagttgtttc 15579563  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 17420189 - 17420292
Alignment:
Q  122 attttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctat 221  Q
    ||||||||||||| ||||| || |||||| ||||||| |  ||   ||| ||||||||||| ||||||||| | |||||||||| ||||| |||||  ||    
T  17420189 attttcatataagctataaact-gttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcat 17420287  T
Q  222 aagct 226  Q
    |||||    
T  17420288 aagct 17420292  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 3528835 - 3528883
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgttt 217  Q
    |||||| ||||||||||||||||| | |||||||||||||||| |||||    
T  3528835 cttatgaaaataagatgaaaacaagttatggacatgtcataagttgttt 3528883  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 34939777 - 34939825
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    ||||||||||||| ||||||||| | |||||||||||||||| ||||||    
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgtttc 34939825  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 3775162 - 3775092
Alignment:
Q  173 tggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcac 243  Q
    |||| ||||| ||||||||  | ||| |||||||||||| |||||||||||||| |||| |||||| ||||    
T  3775162 tggacataagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaatagtctcac 3775092  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 7785782 - 7785732
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttct 219  Q
    |||||||||||||| ||||||||| | || ||||||||||||| |||||||    
T  7785782 cttatggaaataagctgaaaacaacttatagacatgtcataagctgtttct 7785732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 2460189 - 2460132
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| ||||||||| | |  ||||||||||||| |||||| |||||||    
T  2460189 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagct 2460132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 4420675 - 4420732
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||||||||||| ||||||||  | ||| |||||||||||  ||||||||||||||    
T  4420675 cttatggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataagct 4420732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 9027610 - 9027667
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    |||||| ||||||| ||||||||| | |||||||||||||||| | |||| |||||||    
T  9027610 cttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagct 9027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 9668023 - 9667974
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcataagatgtttc 218  Q
    |||||||||||||| ||||||||  | |||||||||||||||| ||||||    
T  9668023 cttatggaaataagttgaaaacagcttatggacatgtcataagttgtttc 9667974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 10616572 - 10616496
Alignment:
Q  176 aaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttttccaaatagtgtcaccaatgcttat 253  Q
    ||||||| |||| |||| | | |||||||||||||| |||||| ||||||| | ||||||||| |||| |||||||||    
T  10616572 aaataagctgaacacaacttacggacatgtcataagttgtttccataagctctcccaaatagt-tcacaaatgcttat 10616496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 281931 - 281844
Alignment:
Q  123 ttttcatataagatataagcttgttttcataagctaacatagttcacttatggaaataagatgaaaacaaataatggacatgtcataag 211  Q
    |||||||||||| |||||||| || ||||||||||| | |||    || ||||||||||| ||||||||| | || |||||||||||||    
T  281931 ttttcatataagctataagct-gtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataag 281844  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 27909676 - 27909636
Alignment:
Q  169 cttatggaaataagatgaaaacaaataatggacatgtcata 209  Q
    |||||||||||||| ||||||||| | ||||||||||||||    
T  27909676 cttatggaaataagctgaaaacaacttatggacatgtcata 27909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 34939546 - 34939602
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagct 226  Q
    ||||||||||||| ||||||||| | | |||| ||||||||| |||||| |||||||    
T  34939546 ttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagct 34939602  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 10654 - 10596
Alignment:
Q  170 ttatggaaataagatgaaaacaaataatggacatgtcataagatgtttctataagcttt 228  Q
    ||||||||||||| ||||||||| | ||||||||||||| || |||||  |||||||||    
T  10654 ttatggaaataagctgaaaacaacttatggacatgtcattagttgtttacataagcttt 10596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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