View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20074_low_9 (Length: 459)

Name: NF20074_low_9
Description: NF20074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20074_low_9
NF20074_low_9
[»] chr5 (12 HSPs)
chr5 (1-450)||(30047870-30048317)
chr5 (3-306)||(16598031-16598337)
chr5 (93-259)||(12019533-12019699)
chr5 (93-259)||(37659471-37659637)
chr5 (93-259)||(7103121-7103287)
chr5 (93-259)||(16794913-16795079)
chr5 (352-434)||(16598337-16598420)
chr5 (93-256)||(30696043-30696206)
chr5 (93-256)||(40370994-40371157)
chr5 (110-259)||(10275281-10275430)
chr5 (311-405)||(40371213-40371307)
chr5 (311-387)||(12019404-12019480)
[»] chr4 (5 HSPs)
chr4 (3-405)||(20290099-20290502)
chr4 (110-259)||(44147802-44147951)
chr4 (180-259)||(31355423-31355502)
chr4 (120-259)||(43682953-43683092)
chr4 (93-259)||(27186883-27187049)
[»] chr3 (5 HSPs)
chr3 (98-256)||(22931059-22931217)
chr3 (93-259)||(54171091-54171257)
chr3 (36-259)||(21847872-21848095)
chr3 (110-259)||(43548459-43548608)
chr3 (93-259)||(9698325-9698491)
[»] chr8 (7 HSPs)
chr8 (120-372)||(44912963-44913216)
chr8 (42-336)||(10683285-10683580)
chr8 (93-259)||(43811230-43811396)
chr8 (93-259)||(201431-201597)
chr8 (93-259)||(316268-316434)
chr8 (93-259)||(30409550-30409716)
chr8 (93-213)||(28647201-28647321)
[»] chr7 (3 HSPs)
chr7 (17-258)||(730353-730594)
chr7 (93-259)||(27757641-27757807)
chr7 (93-259)||(7943830-7943996)
[»] scaffold0044 (2 HSPs)
scaffold0044 (93-259)||(48612-48778)
scaffold0044 (311-387)||(48831-48907)
[»] chr6 (2 HSPs)
chr6 (93-259)||(8319251-8319417)
chr6 (93-259)||(17881226-17881392)
[»] chr2 (4 HSPs)
chr2 (93-259)||(8051636-8051802)
chr2 (93-259)||(36671295-36671461)
chr2 (90-211)||(35953836-35953957)
chr2 (110-259)||(13270292-13270441)
[»] chr1 (2 HSPs)
chr1 (93-259)||(39794639-39794805)
chr1 (93-259)||(26312257-26312423)
[»] scaffold0027 (1 HSPs)
scaffold0027 (53-277)||(54124-54347)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 30048317 - 30047870
Alignment:
Q  1 ttttcaaagtttgcacatcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatc 100  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30048317 ttttcaaagttttcacatcctttgatttttttacggccaccactataaaataaaatcttggagatagtgttcttatgatcgtctcaataatttgttaatc 30048218  T
Q  101 agagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaactta 200  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048217 agagattgtttcactgcatgccttcatttg---tacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaactta 30048121  T
Q  201 aatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgt 300  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048120 aatttccttcttaaagaccgaagctttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgt 30048021  T
Q  301 agaaattttatcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtact 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048020 agaaattttatcaaaatttcctccatcaacaccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtact 30047921  T
Q  401 tcag-tatattcctacccaattcatcagaaccattttgcacaatcttcatc 450  Q
    |||| |  ||||| ||||||||||||| |||||||||||||||||||||||    
T  30047920 tcagttgcattccaacccaattcatcaaaaccattttgcacaatcttcatc 30047870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 16598031 - 16598337
Alignment:
Q  3 ttcaaagtttgcacatcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcag 102  Q
    |||||||||| |||||| || ||||||| || | |||| ||||| |||| ||| ||| |||||||  |||| |||||| |||||| |||||||  ||| |    
T  16598031 ttcaaagttttcacatctttcgattcttgtatgtccactactatgaaatcaaaccttagagatagagttctcatgatcttctcaacaatttgtggatctg 16598130  T
Q  103 agattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaa 202  Q
    | || |||||||| |||||||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||| ||||||||||||| | | | |||    
T  16598131 aaatagtttcactccatgccttcatccgattttcaacattaatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactattcaaa 16598230  T
Q  203 tttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg--atatttctctagaatat-ccaaacttcctttgatcttgtagccg 299  Q
    |||||||| |||||| ||||| ||||||| ||||||||| |||||||||||| |  |||||| || || |||| |||| ||||| ||||| ||||||||     
T  16598231 tttccttcataaagagtgaagctttatctacttcaccttttcatctccttcacgatatatttgtcaagtatatcccaagcttccattgattttgtagcct 16598330  T
Q  300 tagaaat 306  Q
    |||||||    
T  16598331 tagaaat 16598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 12019699 - 12019533
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  12019699 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 12019600  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  12019599 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 12019533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 37659637 - 37659471
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  37659637 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 37659538  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  37659537 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 37659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 7103121 - 7103287
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  7103121 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 7103220  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  7103221 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 7103287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 16795079 - 16794913
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  16795079 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 16794980  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  16794979 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 16794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 16598337 - 16598420
Alignment:
Q  352 tgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcag-tatattcctacccaattcatcagaaccatt 434  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |  ||| | ||||||||||||| |||||||    
T  16598337 tgctttgcaatccttcttctttaactccttatgcgcagttctctgtactttagttgcatttccacccaattcatcataaccatt 16598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 256
Target Start/End: Complemental strand, 30696206 - 30696043
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  30696206 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 30696107  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 256  Q
    ||| || |||||||||||| |  || ||||| || |||  |||||| || ||||| ||||||||    
T  30696106 tcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatg 30696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 40370994 - 40371157
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  40370994 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 40371093  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 256  Q
    |||  | |||||||||||| |  |||||||| || |||   ||||| || ||||| ||||||||    
T  40371094 tcagttcaaatttccttctcagtgactgaagcttaatcaatttcactttatcatcaccttcatg 40371157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 10275430 - 10275281
Alignment:
Q  110 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 209  Q
    |||||| || |||||||||||||  |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||| ||||||| || ||||||||||    
T  10275430 ttcactacaagccttcatctgatacacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttcctt 10275331  T
Q  210 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||||  || ||||| || |||  |||||| || ||||| |||||||||||    
T  10275330 cttagtgattgaagcttaatcaacttcactttatcatcaccttcatgata 10275281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 40371213 - 40371307
Alignment:
Q  311 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagt 405  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || ||||| |||||  | ||||||||||||||    
T  40371213 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttgtgtgcgttcctttgtacttcagt 40371307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 12019480 - 12019404
Alignment:
Q  311 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 387  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  12019480 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 12019404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 405
Target Start/End: Complemental strand, 20290502 - 20290099
Alignment:
Q  3 ttcaaagtttgcacatcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcag 102  Q
    |||||||||| ||||||||||||||| |  |  || ||||||||||||| |||||||||||||||| |||| |||||  |||||| |||||||| ||| |    
T  20290502 ttcaaagttttcacatcctttgattcatgaattgcaaccactataaaatcaaatcttggagatagtgttctcatgattttctcaacaatttgttgatctg 20290403  T
Q  103 agattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaa 202  Q
      | |  ||| |   | || || ||||||||||||||||| || |  ||  |||||||||||  |||||| | ||| || |||||||||||||| |||||    
T  20290402 taactacttctccataagcttttatctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatcaatttaaa 20290303  T
Q  203 tttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgatatttctctagaata-tccaaacttcctttgatcttgtagccgta 301  Q
     |||||||| || |||||||| ||||||| || |||||| ||||| |||||||||||||| || |||||| |  || |||||||||||||||| |   ||    
T  20290302 cttccttctcaatgactgaagctttatctgctccaccttatcatcaccttcatgatatttttccagaatatttgaagcttcctttgatcttgtggattta 20290203  T
Q  302 gaaattttatcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtactt 401  Q
    |||||| | | ||| |||||| ||||||  |  | |||||||| ||||| | | ||||||||||||||||||||||| ||||||||| | || || ||||    
T  20290202 gaaattcttttaaagtttccttcatcaagactctattgaatgaggaacaattccttgcaatccttcttctttaactctttatgtgcattcctatgcactt 20290103  T
Q  402 cagt 405  Q
    ||||    
T  20290102 cagt 20290099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 44147951 - 44147802
Alignment:
Q  110 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 209  Q
    |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || ||||||||||    
T  44147951 ttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttcctt 44147852  T
Q  210 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    || | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  44147851 ctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 44147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 31355502 - 31355423
Alignment:
Q  180 tcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    |||||||| ||||||| || |||||||||||| |  ||||||||||| |||  |||||| || ||||| |||||||||||    
T  31355502 tcttccatctgcatcagctcaaatttccttctcagtgactgaagtttaatcatcttcactttatcatcaccttcatgata 31355423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 43682953 - 43683092
Alignment:
Q  120 gccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagact 219  Q
    |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||||||||||| ||||  | |||||||||||| |  || |    
T  43682953 gccttcatctgattcacaagattgatgaggttagagatgtattcagaaatcttctgatcatcttccatttgtatcagttcaaatttccttctcagtgatt 43683052  T
Q  220 gaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||||||| |||  |||||| || ||||| |||||||||||    
T  43683053 gaagtttaatcaacttcactttatcatcaccttcatgata 43683092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 27187049 - 27186883
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  27187049 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 27186950  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
     || || |||||||||||| |  || ||||| || |||  |||||| || ||| | |||||||||||    
T  27186949 ccagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcaccaccttcatgata 27186883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 22931059 - 22931217
Alignment:
Q  98 atcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaac 197  Q
    |||||| |||||| |||| ||  ||||||||||||||||||||||||||| | |  |||||||||||| |||||||| ||| ||||||||||||||||||    
T  22931059 atcagaaattgttccactacaaaccttcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaac 22931158  T
Q  198 ttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 256  Q
    | |||||||||||||||  ||||||| ||||||| |||||||||  |||||||||||||    
T  22931159 tcaaatttccttcttaataactgaagctttatctgcttcaccttagcatctccttcatg 22931217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 54171091 - 54171257
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  ||||||||| || |||||||||||||    
T  54171091 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgca 54171190  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  54171191 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 54171257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 259
Target Start/End: Complemental strand, 21848095 - 21847872
Alignment:
Q  36 gccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatctgattta 135  Q
    |||||||| || |||| ||| |||| |||||| || || || ||| | ||||  || |||| ||||| ||| | |||||| || |||||||||||||| |    
T  21848095 gccaccacaatgaaatcaaaccttgaagataggatcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagccttcatctgattca 21847996  T
Q  136 caacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctcctt 235  Q
    ||| ||| || |  ||| ||||||| | |  |||||| || || |||||||||||||||| || |||||||||||| | ||| ||||| || |||  |||    
T  21847995 caagattgatgagtttagagatgtacttagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaagcttaatcaactt 21847896  T
Q  236 caccttctcatctccttcatgata 259  Q
    ||| || ||||| |||||||||||    
T  21847895 cactttatcatcaccttcatgata 21847872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 43548608 - 43548459
Alignment:
Q  110 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 209  Q
    |||||| || |||||||||||||| |||| ||| || |  ||| | ||||| |||  ||||||||| || |||||||| ||||||| || ||||||||||    
T  43548608 ttcactacaagccttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttcctt 43548509  T
Q  210 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||||  || ||||| || |||   ||||| || ||||| |||||||||||    
T  43548508 cttagtgattgaagcttaatcaatttcactttatcatcaccttcatgata 43548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 9698491 - 9698325
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  9698491 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 9698392  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
     || || |||||||||||| |  || ||||| || |||  |||||| || ||| | |||||||||||    
T  9698391 ccagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcaccaccttcatgata 9698325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 120 - 372
Target Start/End: Original strand, 44912963 - 44913216
Alignment:
Q  120 gccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagact 219  Q
    |||||||||||||||||||||||| |||  ||  |||||||||||| |||||||||||| ||||||||||||||||  | ||| || |||||||||||||    
T  44912963 gccttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagact 44913062  T
Q  220 gaagttttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaa-cttcctttgatcttgtagccgtagaaattttatcaaaatt 318  Q
    |||| |||||||| ||||||||  |||| ||||||| | || | || |||||||||||| | ||||| ||  |||| |   | || ||| | ||||||||    
T  44913063 gaagctttatctctttcaccttagcatcaccttcataacatctttcaagaatatccaaagcctccttagactttgtggattttgagattctttcaaaatt 44913162  T
Q  319 tcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctt 372  Q
    ||||  ||| || | ||||||||||||||| | ||| ||||| |||||||||||    
T  44913163 tcctgaatctacactttgttgaatgaagaaaagtgccttgcagtccttcttctt 44913216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 336
Target Start/End: Original strand, 10683285 - 10683580
Alignment:
Q  42 actataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatctgatttacaacat 141  Q
    ||||| |||| ||||||||| |||||  |||  |||||| ||| || ||| |||||||| || ||||||| |||||||| |||||||||||| | || ||    
T  10683285 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtcttcatctgattgaaaatat 10683384  T
Q  142 taatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcacctt 241  Q
    ||||||  ||  | |||||||||| ||| ||||  || |||||||| |||||||  |||||||||||||||| ||||||||| || |||| |||||||||    
T  10683385 taatcagtttggatatgtaatcaacaatttttttatcatcttccatctgcatcagtttaaatttccttcttagagactgaagcttgatctgcttcacctt 10683484  T
Q  242 ctcatctccttcatgatatttctctagaatat-ccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccatcaacgccttg 336  Q
     ||||| |||||| |||| |  ||||| |||| |||  ||||||||| | ||||| || | || ||||| ||||| |||| ||||| ||| |||||    
T  10683485 ttcatcaccttcacgatactcttctagtatatcccatgcttcctttgtttttgtaacctttgatattttctcaaagtttcttccattaacaccttg 10683580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 43811230 - 43811396
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  43811230 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 43811329  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  43811330 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 43811396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 201431 - 201597
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  201431 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 201530  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  201531 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 201597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 316268 - 316434
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  316268 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 316367  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  316368 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 316434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 30409550 - 30409716
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  30409550 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 30409649  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  30409650 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 30409716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 28647321 - 28647201
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| ||    ||| ||||||| |||  |||||| || || |||||||||||||    
T  28647321 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgtgtttagagatgtattcagaaatcttctgatcatcttccatttgca 28647222  T
Q  193 tcaacttaaatttccttctta 213  Q
    |||  | ||||||||||||||    
T  28647221 tcagttcaaatttccttctta 28647201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 730594 - 730353
Alignment:
Q  17 atcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactg 116  Q
    ||||||||||||||  |  || ||||||||||||| ||||||||  |||||| |||| || ||  |||||| |||||||| |||||  |||| ||| |      
T  730594 atcctttgattcttgaattgcaaccactataaaatcaaatcttgatgatagtgttctcatcattttctcaacaatttgttgatcagtcattgcttctcca 730495  T
Q  117 catgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaag 216  Q
    || |||||||||||||| |||| ||| || |  ||  |||| || |||  ||| |||||||| || ||||| |||||||| | ||| |||||||| ||||    
T  730494 caagccttcatctgattcacaatattgatgagtttggagatatattcagcaatattttgctcttcctccatctgcatcaattcaaacttccttctcaaag 730395  T
Q  217 actgaagttttatctccttcaccttctcatctccttcatgat 258  Q
    ||||||| || |||  ||||||||| ||||| ||||||||||    
T  730394 actgaagcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 27757807 - 27757641
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  27757807 tgttgatcagtgatagcttcactacacgccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 27757708  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| |||||||| |||  |||||| || ||||| |||||||||||    
T  27757707 tcagctcaaatttccttctcagagattgaagtttaatcaacttcactttatcatcaccttcatgata 27757641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 7943830 - 7943996
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  7943830 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 7943929  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  7943930 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 7943996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 48612 - 48778
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  48612 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 48711  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  48712 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 48778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 48831 - 48907
Alignment:
Q  311 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 387  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  48831 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 48907  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 8319251 - 8319417
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  8319251 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 8319350  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  8319351 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 8319417  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 17881226 - 17881392
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  17881226 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcataaatcttatgatcatcttccatttgca 17881325  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
      | || |||||||||||| |  || ||||| || |||  |||||| || ||||| |||||||||||    
T  17881326 atagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatgata 17881392  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 8051802 - 8051636
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  8051802 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 8051703  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  8051702 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 8051636  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 36671461 - 36671295
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  36671461 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 36671362  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  36671361 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 36671295  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 35953836 - 35953957
Alignment:
Q  90 atttgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccattt 189  Q
    ||||||| ||||| ||| | |||||| || |||||||||| ||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||||||||||    
T  35953836 atttgttgatcagtgatagcttcactacaagccttcatctaattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccattt 35953935  T
Q  190 gcatcaacttaaatttccttct 211  Q
    |||||| || ||||||||||||    
T  35953936 gcatcagctcaaatttccttct 35953957  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 13270292 - 13270441
Alignment:
Q  110 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 209  Q
    |||||| || ||||||| |||||| |||| ||| || |  ||| ||||||| |||  |||||| |  || |||||||||||||||| || ||||||||||    
T  13270292 ttcactacaagccttcacctgattcacaagattgatgagtttagagatgtattcagaaatcttctaatcatcttccatttgcatcagctcaaatttcctt 13270391  T
Q  210 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    || |  || ||||| || |||  |||||| || ||||| |||||||||||    
T  13270392 ctcagtgattgaagcttaatcaacttcactttatcatcaccttcatgata 13270441  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 39794805 - 39794639
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  39794805 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 39794706  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  39794705 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 39794639  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 26312423 - 26312257
Alignment:
Q  93 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 192  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  26312423 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 26312324  T
Q  193 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 259  Q
    ||| || |||||||||||| | ||| || || || |||  |||||| || ||||| |||||||||||    
T  26312323 tcagctcaaatttccttctcagagattggagcttaatcaacttcactttatcatcaccttcatgata 26312257  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 277
Target Start/End: Original strand, 54124 - 54347
Alignment:
Q  53 aaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaactta 152  Q
    ||||||||| |||||  |||| || ||| | |||| |||||||| |||| | |||||  |||| ||||||||| ||||||| ||||  || |||| |||     
T  54124 aaatcttggtgatagggttctcattatcttttcaacaatttgttgatcataaattgtcccactccatgccttcctctgattcacaatgttgatca-cttt 54222  T
Q  153 aagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctcctt 252  Q
     |||||||||||| |||||| || |  ||||||||||  ||||  | ||||||||| || ||||| ||||| || |||| ||||||||| ||||| ||||    
T  54223 gagatgtaatcaacaatcttatgatattcttccatttatatcagttgaaatttcctcctcaaagattgaagcttgatctgcttcaccttttcatcacctt 54322  T
Q  253 catgatatttctctagaatatccaa 277  Q
    |||  || ||||| ||||| |||||    
T  54323 cattgtagttctcaagaatgtccaa 54347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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