View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20075_high_1 (Length: 828)

Name: NF20075_high_1
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20075_high_1
NF20075_high_1
[»] chr4 (15 HSPs)
chr4 (281-808)||(24297984-24298512)
chr4 (405-808)||(23423357-23423760)
chr4 (405-808)||(23875193-23875596)
chr4 (376-808)||(23447823-23448260)
chr4 (391-808)||(26827745-26828174)
chr4 (16-218)||(24299995-24300199)
chr4 (505-711)||(23446603-23446809)
chr4 (279-332)||(24298815-24298868)
chr4 (231-284)||(23447727-23447780)
chr4 (287-355)||(23402437-23402505)
chr4 (254-358)||(26828190-26828292)
chr4 (287-340)||(23414976-23415028)
chr4 (271-356)||(43698620-43698704)
chr4 (289-335)||(31632982-31633028)
chr4 (287-348)||(26436169-26436230)
[»] chr8 (1 HSPs)
chr8 (457-807)||(35961528-35961878)
[»] chr1 (2 HSPs)
chr1 (554-704)||(12165045-12165197)
chr1 (504-637)||(30436995-30437128)
[»] chr2 (5 HSPs)
chr2 (471-645)||(41257791-41257965)
chr2 (647-807)||(41244594-41244754)
chr2 (465-645)||(41244323-41244503)
chr2 (647-801)||(41257557-41257711)
chr2 (459-528)||(41251859-41251928)
[»] chr7 (1 HSPs)
chr7 (583-765)||(44071901-44072083)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 281 - 808
Target Start/End: Complemental strand, 24298512 - 24297984
Alignment:
Q  281 caattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaaagcnnnnnnnnn-gaaagaaaacta 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||||||||||    
T  24298512 caattttcattaattccaccactatcatacacaaaaaggatcaacaagatacaattacttcatcacaacttcaaaagcaaaaaaaaaagaaagaaaacta 24298413  T
Q  380 attaaaagatctaattgttcctagaatcagatctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcagtcttcttag 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24298412 attaaaagatctaattgttcctagaatcagatctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttag 24298313  T
Q  480 gcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaa 579  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  24298312 gcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaa 24298213  T
Q  580 cacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctagg 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24298212 cacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctagg 24298113  T
Q  680 tatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagaccagctctgatggatc 779  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||| ||||    
T  24298112 tataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattgatc 24298013  T
Q  780 ttgtcaccgacttcttccttggtcctcct 808  Q
    |||||||||||||||||||||||||||||    
T  24298012 ttgtcaccgacttcttccttggtcctcct 24297984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 405 - 808
Target Start/End: Original strand, 23423357 - 23423760
Alignment:
Q  405 atcagatctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcagtcttcttaggcaaaaggattgggttgatgtttgg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||| ||||| ||||||||    
T  23423357 atcagatctaagccttctttggagactttccagccttctttggctccttagaaacagaattttcaatcttcttaggcaaaaggatagggttaatgtttgg 23423456  T
Q  505 aagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattc 604  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  23423457 aagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagatcttcatcattcctaacagccaacaacacatgccttggaatgattctattc 23423556  T
Q  605 ttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacac 704  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23423557 ttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacac 23423656  T
Q  705 gctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  23423657 gctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccggaaattgaagaccagctctgatggatcttgtcaccgacttcttccttggtcc 23423756  T
Q  805 tcct 808  Q
    ||||    
T  23423757 tcct 23423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 405 - 808
Target Start/End: Complemental strand, 23875596 - 23875193
Alignment:
Q  405 atcagatctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcagtcttcttaggcaaaaggattgggttgatgtttgg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||||| ||||||||    
T  23875596 atcagatctaagccttctttggagactttccagccttctttggctccttagtatcagttttttcattcttcttaggcaataggattgggttaatgtttgg 23875497  T
Q  505 aagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattc 604  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  23875496 aagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattctattc 23875397  T
Q  605 ttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacac 704  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23875396 ttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacac 23875297  T
Q  705 gctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||    
T  23875296 gctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggacc 23875197  T
Q  805 tcct 808  Q
    ||||    
T  23875196 tcct 23875193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 376 - 808
Target Start/End: Original strand, 23447823 - 23448260
Alignment:
Q  376 actaattaaaagatctaattgttcctagaatcagatctaagccttctttggagactttccagcctt---------ctttggctccttaggaacagctttt 466  Q
    ||||||||||  |||||||||||||||||    |||||||||||||||||||||||||||||| ||         ||| || ||||||| |||||| |||    
T  23447823 actaattaaattatctaattgttcctaga----gatctaagccttctttggagactttccagcttttttgggagacttaggttccttagaaacagccttt 23447918  T
Q  467 tcagtcttcttaggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcc 566  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  23447919 tcagtcttcttaggcaaaaggattgggttgatgttgggaaaaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcc 23448018  T
Q  567 tcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaag 666  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  23448019 taacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaag 23448118  T
Q  667 aactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagacca 766  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||     
T  23448119 aactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccg 23448218  T
Q  767 gctctgatggatcttgtcaccgacttcttccttggtcctcct 808  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  23448219 gctctgattgatcttgtcaccgacttcttccttggttctcct 23448260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 391 - 808
Target Start/End: Complemental strand, 26828174 - 26827745
Alignment:
Q  391 taattgttcctagaatcagatctaagccttctttggagactttccagcctt------ctttggctcctt------aggaacagctttttcagtcttctta 478  Q
    ||||| |||||| |||||||||||||| ||||| |||||||||||||||||      ||||||||||||      || |  |||  ||||||||||||||    
T  26828174 taattcttcctaaaatcagatctaagctttcttaggagactttccagccttagtagtctttggctccttgccaccagtattagccctttcagtcttctta 26828075  T
Q  479 ggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaaca 578  Q
    ||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||||  ||||| ||| |||||||||||||| ||||| ||||||||||    
T  26828074 ggcaacagaattgggttaatgttcggaagaacaccaccatgagcaattgtaacaccagcaagcagttttccaagctcttcatcattcctaacagccaaca 26827975  T
Q  579 acacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctag 678  Q
    ||| |||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||| |||||||| || |||||||||||||| |||||    
T  26827974 acaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagcgaggtattcaagaactgcagctag 26827875  T
Q  679 gtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagaccagctctgatggat 778  Q
    ||| || |||||||| ||||||||||||||||| ||||  |||||||||| ||| |  ||||||||||| || ||||| || || || ||||||||||||    
T  26827874 gtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactgggaattggagtccggctctgatggat 26827775  T
Q  779 cttgtcaccgacttcttccttggtcctcct 808  Q
    ||||||||||||||||||||||| ||||||    
T  26827774 cttgtcaccgacttcttccttggacctcct 26827745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 24300199 - 24299995
Alignment:
Q  16 atgaaatcccataccggattacaccaggaatgaaaccctaatgcggtgcataaaattttctcccatcatcttcctgatccaaactctaatgcgaatgcac 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24300199 atgaaatcccatac-ggattacaccaggaatgaaaccctaatgcggtgcataaaattttctcccatcgtcttcctgatccaaactctaatgcgaatgcac 24300101  T
Q  116 cgcccctg---nnnnnnnnnncactgcatccaaagctccaacacaagcaaccagaccgcacgcaaacgaggtggctgatactgctgcttccaatgctata 212  Q
    ||||||||             |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  24300100 cgcccctggaaaaaaaaaaaccactacatccaaagctctaacacaagcaaccagaccgcacgcaaatgaggtggctgatactgctgctgccaatgctata 24300001  T
Q  213 attctt 218  Q
     |||||    
T  24300000 gttctt 24299995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 505 - 711
Target Start/End: Original strand, 23446603 - 23446809
Alignment:
Q  505 aagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattc 604  Q
    ||||| ||||||||||||||| || |||||   ||| | ||| ||||| |||||||| ||| | ||||| ||||||| |||||||||||| |||||||||    
T  23446603 aagaataccaccatgagcaattgtaacacctacaagtagtttcccaagttcttcatcattcataacagcaaacaacaaatgccttggaataattctattc 23446702  T
Q  605 ttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacac 704  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||    
T  23446703 ttcttgttatcacgagctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacac 23446802  T
Q  705 gctgagc 711  Q
    |||||||    
T  23446803 gctgagc 23446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 24298868 - 24298815
Alignment:
Q  279 cccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatcc 332  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  24298868 cccaattttcattaattttaccattatcatacacaaaaaggatcaacaagatcc 24298815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 23447727 - 23447780
Alignment:
Q  231 attagaatataaactcattgaaattgtagaatagaaacaattttgaagcccaat 284  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  23447727 attagaatataaacttaaagaaattgtagaatagaaacaattttgaagtccaat 23447780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 23402505 - 23402437
Alignment:
Q  287 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaa 355  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||  | |||||||| ||| |||||||    
T  23402505 tcattaattccaccattatcatacacaaagaggatcaaccagatctcactacttcattacagcttcaaa 23402437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 26828292 - 26828190
Alignment:
Q  254 ttgtagaatagaaacaattttgaagcccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttca 353  Q
    ||||| |||||||||| |||||||| ||||| | |||||| || |||| | ||||| ||||||| |||||  |||||||||||||||||| ||| |||||    
T  26828292 ttgtaaaatagaaacatttttgaagaccaatat-cattaaatc-accattttcataaacaaaaaagatcagaaagatccaattacttcattacatcttca 26828195  T
Q  354 aaagc 358  Q
    |||||    
T  26828194 aaagc 26828190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 23414976 - 23415028
Alignment:
Q  287 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattactt 340  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||| |||||||    
T  23414976 tcattaattccaccattatcatacac-aaaaggatcaaccagatcccattactt 23415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 43698620 - 43698704
Alignment:
Q  271 ttttgaagcccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaaa 356  Q
    ||||||||||||| || ||||||||| |||||| | |||||||||| ||| |||| | |||| |||||||||| ||||||| ||||    
T  43698620 ttttgaagcccaaatt-cattaattctaccactttgatacacaaaagggaccaacgatatcccattacttcattacaactttaaaa 43698704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 31633028 - 31632982
Alignment:
Q  289 attaattccaccactatcatacacaaaaaggatcaacaagatccaat 335  Q
    ||||||||||||| | ||||  |||||||||||||||||||||||||    
T  31633028 attaattccaccattttcattaacaaaaaggatcaacaagatccaat 31632982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 26436230 - 26436169
Alignment:
Q  287 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaa 348  Q
    ||||||||||||||| | ||||  |||||| |||||||||||||||||| | ||||| ||||    
T  26436230 tcattaattccaccattttcattaacaaaagggatcaacaagatccaatcagttcattacaa 26436169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 457 - 807
Target Start/End: Complemental strand, 35961878 - 35961528
Alignment:
Q  457 aacagctttttcagtcttcttaggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctct 556  Q
    ||||| ||||||| | |||||||| ||||| |  ||||| || || |||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  35961878 aacaggtttttcacttttcttaggtaaaagaacagggttaatattaggaagaacaccaccatgagcaatggtaacaccagcaagcaatttcccaagctct 35961779  T
Q  557 tcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaa 656  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||    
T  35961778 tcatcattcctcacagccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaacttcagcagcaa 35961679  T
Q  657 gatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaa 756  Q
    ||||||||||||| || |||| ||| || |||||||| ||||||||||| ||||| ||||  |||||||||||||| |  ||||||||||| || |||||    
T  35961678 gatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggccgattcttcccactgggaa 35961579  T
Q  757 ctgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcc 807  Q
     ||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  35961578 ttgaagtccggctctgattgatcttgttaccgacttcttccttggtcctcc 35961528  T

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Target: chr1 (Bit Score: 118; Significance: 9e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 554 - 704
Target Start/End: Complemental strand, 12165197 - 12165045
Alignment:
Q  554 tcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcag 653  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12165197 tcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacctcagcag 12165098  T
Q  654 caagatattca--agaactgctgctaggtatactggagcacctgtgccgacac 704  Q
    | |||||||||  ||||||||||||||||||||||||||||| || |||||||    
T  12165097 cgagatattcaagagaactgctgctaggtatactggagcaccggttccgacac 12165045  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 637
Target Start/End: Complemental strand, 30437128 - 30436995
Alignment:
Q  504 gaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctatt 603  Q
    ||||||||||||||||||||||||| || |||  | |||||||  |||||||||||| | |||| |   |||||| || ||||||||| || || ||| |    
T  30437128 gaagaacaccaccatgagcaatggtaactccagcatgcaatttttcaagctcttcattgatccttatcaccaacagcatatgccttgggataatcctagt 30437029  T
Q  604 cttcttgttatcacgtgctgcatttccagccaac 637  Q
     |||  ||| ||| | |||||||||||| |||||    
T  30437028 tttccggttgtcatgagctgcatttccaaccaac 30436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 471 - 645
Target Start/End: Complemental strand, 41257965 - 41257791
Alignment:
Q  471 tcttcttaggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcac 570  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||   | |||||| ||||| |||||||||||||||||    
T  41257965 tcttcttaggcaaaaggattgggttgatgtttggaagaacacctccatgtgcaattgtaacaccagctaacaattttccaagttcttcatcgttcctcac 41257866  T
Q  571 agccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 645  Q
    |||||||||||| ||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  41257865 agccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaac 41257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 647 - 807
Target Start/End: Original strand, 41244594 - 41244754
Alignment:
Q  647 tcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttc 746  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||    
T  41244594 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttc 41244693  T
Q  747 caaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcc 807  Q
    |||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  41244694 caactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctcc 41244754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 465 - 645
Target Start/End: Original strand, 41244323 - 41244503
Alignment:
Q  465 tttcagtcttcttaggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgtt 564  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||| || || |||   |  ||||| || ||||||||||| ||    
T  41244323 tttcagtcttcttaggcaaaagcacagggttgatgtttggaagaacaccaccatgtgcaattgtaactccagctaataattttcctagctcttcatcatt 41244422  T
Q  565 cctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 645  Q
    |||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  41244423 cctcactgccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac 41244503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 647 - 801
Target Start/End: Complemental strand, 41257711 - 41257557
Alignment:
Q  647 tcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttc 746  Q
    ||||||||||||||||||||||| || |||| ||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||    
T  41257711 tcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattcttc 41257612  T
Q  747 caaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttgg 801  Q
    | || || || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  41257611 cgactggaaattgaagaccagctctggtggatcttgtcactgacttcttccttgg 41257557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 41251928 - 41251859
Alignment:
Q  459 cagctttttcagtcttcttaggcaaaaggattgggttgatgtttggaagaacaccaccatgagcaatggt 528  Q
    |||| |||||||||||||| ||||| |  || ||||||||||| ||||||||||||||| ||||||||||    
T  41251928 cagccttttcagtcttctttggcaacaacatagggttgatgttaggaagaacaccaccacgagcaatggt 41251859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 765
Target Start/End: Original strand, 44071901 - 44072083
Alignment:
Q  583 atgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggtat 682  Q
    |||||||||||  |||| |||||||||||| || |  || || || |||||||| || | ||| |||||||| ||||| ||||| || || |  |||||     
T  44071901 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 44072000  T
Q  683 actggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagacc 765  Q
    || |||||||| | ||||||||| | ||||||| ||||   ||| | | ||||  ||||||||||||| ||||| ||||||||    
T  44072001 accggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgattcttccaacggggaattgaagacc 44072083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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