View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_high_5 (Length: 556)
Name: NF20075_high_5
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_high_5 |
 | |
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| [»] scaffold0038 (4 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 28180152 - 28180488
Alignment:
| Q |
1 |
aatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaacatatttcgagtagattttacattatagtctaattaatctaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28180152 |
aatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaacatatttcgagtagattttacattatagtctaattaatctgaa |
28180251 |
T |
|
| Q |
101 |
ccattggctactttgatatttaggttagactagattacacggttcatcatattttcaattttatagattatccttataaatatttctcagtttcaaataa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28180252 |
ccattggctactttgatatttatgttagactagattgcacggttcttgatattttcaattttatagattatccatataaatatttctcagtttcaaataa |
28180351 |
T |
|
| Q |
201 |
tgtaaggtcttcaatgattgaaaattgatgataatgctaagagaacatcttacccaatggaattgtcattgacaatgaaatatttccaacaaaacacggt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28180352 |
tgtaaggtcttcaatgattgaaaattgatgataatgctaagagaacatcttacccaatggaattgtcattgacaatgaaatatttccaacaaaacacggt |
28180451 |
T |
|
| Q |
301 |
tttgagtgacccaccaaattaaccacacaccaatgaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
28180452 |
tttgagtgacccaccaaattaaccacacaccaatgaa |
28180488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 414 - 540
Target Start/End: Original strand, 28180565 - 28180691
Alignment:
| Q |
414 |
acgtgtaaaataattattaagtcgaaaaatttctaaccatttacccattcactaaacgtaattaagcacaagtgaactaaccatttaaattgatatactg |
513 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28180565 |
acgtgtaaaataattattaagtcgaaaaatttctaaccatttacccattcactaaacgtaattaagcacaagtgaactaaccatttaaattgatatactg |
28180664 |
T |
|
| Q |
514 |
aaatttgatgttgaatttgtgtgttaa |
540 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
28180665 |
aaatttgatgttgaatttgtgtgttaa |
28180691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 414 - 540
Target Start/End: Original strand, 28184817 - 28184943
Alignment:
| Q |
414 |
acgtgtaaaataattattaagtcgaaaaatttctaaccatttacccattcactaaacgtaattaagcacaagtgaactaaccatttaaattgatatactg |
513 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184817 |
acgtgtaaaataattattaagtcgaaaaatttctaaccatttacccattcactaaacgtaattaagcacaagtgaactaaccatttaaattgatatactg |
28184916 |
T |
|
| Q |
514 |
aaatttgatgttgaatttgtgtgttaa |
540 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
28184917 |
aaatttgatgttgaatttgtgtgttaa |
28184943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 28241900 - 28242047
Alignment:
| Q |
59 |
atatttcgagtagattttacattatagtctaat--taatctaaaccattggctactttgatatttaggttagactagattacacggttcatcatattttc |
156 |
Q |
| |
|
||||||| || ||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||| |
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| T |
28241900 |
atatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgatatttatgttagactagattgcacggttcttgatattttc |
28241999 |
T |
|
| Q |
157 |
aattttatag--attatccttataaatatttctcagtttcaaataatg |
202 |
Q |
| |
|
|| ||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
28242000 |
aactttatagttaatatgcttataaatatttctcagtttcaaataatg |
28242047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 28148926 - 28149014
Alignment:
| Q |
210 |
ttcaatgattgaaaattgatgataatgctaagagaacatcttacccaatggaattgtcattgacaatgaaatatttccaacaaaacacggtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
28148926 |
ttcaatgattgaaaattgatgataatgctatgagaacagcttacccaatggaatcga---tgacaatgaaatatttccaacaaaacacggtt |
28149014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 28242056 - 28242122
Alignment:
| Q |
248 |
tcttacccaatggaattgtcattgacaatgaaatatttccaacaaaacacggttttgagtgacccac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
28242056 |
tcttacccaatggaattgtcattgacaatgaaatttttccaacaaaacacggtattgagtgacccac |
28242122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28224939 - 28224995
Alignment:
| Q |
1 |
aatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa |
57 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
28224939 |
aatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa |
28224995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 28225040 - 28225076
Alignment:
| Q |
100 |
accattggctactttgatatttaggttagactagatt |
136 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
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| T |
28225040 |
accatttgctactttgatatttatgttagactagatt |
28225076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 42062 - 42209
Alignment:
| Q |
59 |
atatttcgagtagattttacattatagtctaat--taatctaaaccattggctactttgatatttaggttagactagattacacggttcatcatattttc |
156 |
Q |
| |
|
||||||| || ||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||| |
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|
| T |
42062 |
atatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgatatttatgttagactagattgcacggttcttgatattttc |
42161 |
T |
|
| Q |
157 |
aattttatag--attatccttataaatatttctcagtttcaaataatg |
202 |
Q |
| |
|
|| ||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
42162 |
aactttatagttaatatgcttataaatatttctcagtttcaaataatg |
42209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 42218 - 42284
Alignment:
| Q |
248 |
tcttacccaatggaattgtcattgacaatgaaatatttccaacaaaacacggttttgagtgacccac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
42218 |
tcttacccaatggaattgtcattgacaatgaaatttttccaacaaaacacggtattgagtgacccac |
42284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25437 - 25493
Alignment:
| Q |
1 |
aatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa |
57 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
25437 |
aatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa |
25493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 25538 - 25574
Alignment:
| Q |
100 |
accattggctactttgatatttaggttagactagatt |
136 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
25538 |
accatttgctactttgatatttatgttagactagatt |
25574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 58902 - 58778
Alignment:
| Q |
124 |
gttagactagattacacggttcatcatattttcaattttatagattatc--cttataaatatttctcagtttcaaataatgtaaggtcttcaatgattga |
221 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||| |
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|
| T |
58902 |
gttagactagattgcacggttcttgatattttcaattttatagattatatgcttataaatatttatcagtttcaaataatgtacg-tcttcaatgattga |
58804 |
T |
|
| Q |
222 |
aaattgatgataatgctaagagaaca |
247 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
58803 |
aaattgatgataatgctatgagaaca |
58778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 58976 - 58925
Alignment:
| Q |
1 |
aatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattg |
52 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
58976 |
aatgttgcaaagagcattgaattcaacattggagccactcttgcattgattg |
58925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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