View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20075_low_1 (Length: 981)

Name: NF20075_low_1
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20075_low_1
NF20075_low_1
[»] chr2 (1 HSPs)
chr2 (1-972)||(42959918-42960893)
[»] chr5 (4 HSPs)
chr5 (32-198)||(35607889-35608055)
chr5 (118-275)||(8309412-8309561)
chr5 (796-845)||(3094265-3094314)
chr5 (796-845)||(3085419-3085468)
[»] chr8 (3 HSPs)
chr8 (494-972)||(5504339-5504817)
chr8 (111-188)||(11791979-11792056)
chr8 (123-188)||(29858345-29858410)
[»] chr6 (5 HSPs)
chr6 (121-188)||(7712361-7712428)
chr6 (217-273)||(29246407-29246463)
chr6 (122-184)||(10890479-10890538)
chr6 (134-196)||(473905-473967)
chr6 (122-187)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (123-196)||(3182435-3182508)
chr7 (121-180)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (112-188)||(13873370-13873445)
chr3 (122-175)||(32783461-32783514)
[»] chr4 (2 HSPs)
chr4 (121-180)||(56081265-56081324)
chr4 (216-273)||(40829662-40829719)
[»] chr1 (1 HSPs)
chr1 (112-167)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 927; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 927; E-Value: 0
Query Start/End: Original strand, 1 - 972
Target Start/End: Complemental strand, 42960893 - 42959918
Alignment:
Q  1 taagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960893 taagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactca 42960794  T
Q  101 tcacctaatttgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaag 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960793 tcacctaatttgagttttgttattttgacacacaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaag 42960694  T
Q  201 tttagtatat----ggttaattaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgcgatgctggaagtcattaacca 296  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  42960693 tttagtatatatatggttaattaatgaatattacaagatgtcgcaactcattaaccatttaccgaacacaattaaccacgatgctggaagtcattaacca 42960594  T
Q  297 tttaccgagcacaatcaacaaggcgtgcaatgtctatacgagcattgaatagtaaaatagaaactaacaagtaacatgcatagaagtgatttttcctttc 396  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  42960593 tttaccgagcacaatcaacaaggcgtgcaacgtctatacgagcattgaatagtaaaatagaaactaacaagtaatatgcatagaagtaatttttcatttc 42960494  T
Q  397 atgataaaccagattgggcagctctcaacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960493 atgataaaccagattgggcagctctcaacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattg 42960394  T
Q  497 aagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgt 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960393 aagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgt 42960294  T
Q  597 taccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctc 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960293 taccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctc 42960194  T
Q  697 actttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactag 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960193 actttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactag 42960094  T
Q  797 aacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaa 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960093 aacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaa 42959994  T
Q  897 cagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg 972  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42959993 cagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg 42959918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 4e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
Q  32 tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac 131  Q
    ||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||    
T  35607889 tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac 35607988  T
Q  132 aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca 198  Q
    | ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  35607989 acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca 35608055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 8309412 - 8309561
Alignment:
Q  118 tgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatatggttaat 217  Q
    |||||||||||||||||  |||| ||| ||||||| ||| |||| ||||||||||||| | ||||| |||| || |||| | ||  | || |||    ||    
T  8309412 tgttattttgacacaaa--tttgacatcaaatttcaacagcaaaatagatggttaacaaaattcaattatgtggttaattatgtccaatagatg----at 8309505  T
Q  218 taatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgc 275  Q
    |||||||||  ||||||| |||||||||  |||||||||||||| |||||||||||||    
T  8309506 taatgaata--acaagatatcgcaactcactaaccattcaccgagcacaattaaccgc 8309561  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
Q  796 gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg 845  Q
    ||||| |||||||||||||||||||| ||||| ||||| |||||||||||    
T  3094265 gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg 3094314  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
Q  796 gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg 845  Q
    ||||| |||||||||||||||||||| || || ||||| |||||||||||    
T  3085419 gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg 3085468  T

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Target: chr8 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 494 - 972
Target Start/End: Original strand, 5504339 - 5504817
Alignment:
Q  494 ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc 593  Q
    |||||||||| |||||||| ||  |||| || |||||||  | | | ||||||  |||||| ||||| ||| ||||||| |||||| |||| || |||||    
T  5504339 ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc 5504438  T
Q  594 tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaat 693  Q
    |||||||||||||||||||||||| || |||||| |  | ||||| |||||||| ||| |  | || |  ||||| ||||||||| | |||||||||||     
T  5504439 tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaac 5504538  T
Q  694 ctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcac 793  Q
      ||| || ||| ||| | ||||  ||||   ||||||||||   | ||||||| ||| | ||||| | |||||||| |||| |||||| |||   || |    
T  5504539 tacacattatgtaaaagagaaaccgcagagagacttcttaaccttagtgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccc 5504638  T
Q  794 tagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgt 893  Q
    |||| ||||| || | ||||||||| ||||| |||||||| || ||||||||||| ||||| || |||||  |     | ||| ||||||||||||  ||    
T  5504639 tagagcagttctgcaaagacactgtcatcacaatttggcattaccatggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgt 5504738  T
Q  894 taacagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg 972  Q
    | ||||||| || ||| | ||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| |||||||||    
T  5504739 tgacagactccgagtcgtcgatggttcaacgtttactgaatcaccaggaacaaatcctcaagccactgtgatgatgatg 5504817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
Q  111 tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 188  Q
    |||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  11791979 tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg 11792056  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
Q  123 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 188  Q
    |||||| ||||||||||| ||| ||||||||||  ||| ||||| |||||||||| ||||||||||    
T  29858345 ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg 29858410  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
Q  121 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 188  Q
    ||||||||||||  ||||||  |  ||||||||||||||  |||||||||||||||||||||||||||    
T  7712428 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg 7712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 29246463 - 29246407
Alignment:
Q  217 ttaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc 273  Q
    ||||||||||| ||||| ||||||||||| |||||||| ||| ||||| ||||||||    
T  29246463 ttaatgaatataacaaggtgtcgcaactcattaaccatacactgaacataattaacc 29246407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
Q  122 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 184  Q
    |||||||||||||  |||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  10890538 attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa 10890479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
Q  134 aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 196  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| |||||||    
T  473967 aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat 473905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  122 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat 187  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||| ||||||||  ||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
Q  123 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 196  Q
    |||||| ||||||||||| ||  ||||||||||||| | ||||||||||||  ||||| ||||||| |||||||    
T  3182435 ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat 3182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
Q  121 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 180  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | ||||||    
T  37702135 tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt 37702076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
Q  112 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 188  Q
    ||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| |||||||    
T  13873370 gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg 13873445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
Q  122 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca 175  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||| ||||||||    
T  32783514 attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca 32783461  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
Q  121 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 180  Q
    |||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| ||||    
T  56081324 tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt 56081265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 40829719 - 40829662
Alignment:
Q  216 attaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc 273  Q
    |||||||||||| ||||| ||| ||||||| |||||||| ||| || |||||||||||    
T  40829719 attaatgaatataacaaggtgtagcaactcattaaccatccactgagcacaattaacc 40829662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
Q  112 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat 167  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||    
T  2443403 gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat 2443458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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