View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_low_11 (Length: 283)
Name: NF20075_low_11
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 49206330 - 49206585
Alignment:
| Q |
18 |
gtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaagcatgatttgatttcaatttattttgttgttggtggtg |
117 |
Q |
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| T |
49206330 |
gtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaagcatgatttgatttcaatttattttgttgttggtggtg |
49206429 |
T |
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| Q |
118 |
gatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccatataaccaaaattttgaggccctgtaaattggtaaagaa |
217 |
Q |
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| T |
49206430 |
gatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccatataaccaaaattttgaggccctgtaaattggtaaagaa |
49206529 |
T |
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| Q |
218 |
ctcgttatttcatgacttacgcataccgacaaaaagaataaccacgatgtgatgat |
273 |
Q |
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| T |
49206530 |
ctcgttatttcatgacttacgcataccgacaacaaaaataaccacgatgtgatgat |
49206585 |
T |
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