View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_low_12 (Length: 247)
Name: NF20075_low_12
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1071735 - 1071497
Alignment:
| Q |
1 |
agtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccatagaaaatcattactttgttgatcagtattgttgttgg- |
99 |
Q |
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| T |
1071735 |
agtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggc |
1071636 |
T |
|
| Q |
100 |
tttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgaagtagacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071635 |
tttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttga |
1071536 |
T |
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| Q |
200 |
ttgttgttggtaagtagttcaaggtttccctctctgctc |
238 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
1071535 |
ttgttgttggtaagtagttcaaggtttccctctttgctc |
1071497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 1087395 - 1087168
Alignment:
| Q |
2 |
gtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccatagaaaatcattactttgttgatcagtattgttgttgg-t |
100 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
1087395 |
gtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggct |
1087296 |
T |
|
| Q |
101 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgaagtagacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087295 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgat |
1087196 |
T |
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| Q |
201 |
tgttgttggtaagtagttcaaggtttcc |
228 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
1087195 |
tgttgttggtaagtatttcaaggtttcc |
1087168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 1103951 - 1103724
Alignment:
| Q |
2 |
gtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccatagaaaatcattactttgttgatcagtattgttgttgg-t |
100 |
Q |
| |
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|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
1103951 |
gtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggct |
1103852 |
T |
|
| Q |
101 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgaagtagacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103851 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgat |
1103752 |
T |
|
| Q |
201 |
tgttgttggtaagtagttcaaggtttcc |
228 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
1103751 |
tgttgttggtaagtatttcaaggtttcc |
1103724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 1046921 - 1046694
Alignment:
| Q |
2 |
gtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccatagaaaatcattactttgttgatcagtattgttgttgg-t |
100 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
1046921 |
gtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggct |
1046822 |
T |
|
| Q |
101 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgaagtagacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||| | |
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| T |
1046821 |
ttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagatcgggttgtgatgtttgttgaccaaacaagtgtttggt |
1046722 |
T |
|
| Q |
201 |
tgttgttggtaagtagttcaaggtttcc |
228 |
Q |
| |
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||||||||| ||||||| | |||||||| |
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| T |
1046721 |
tgttgttggaaagtagtactaggtttcc |
1046694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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