View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20075_low_13 (Length: 229)
Name: NF20075_low_13
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49206901 - 49206679
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49206901 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgtttcctccggcttggatgggat |
49206802 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatgtgttttattcaccagtctttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206801 |
ctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatgtgttttattcaccagtctttta |
49206702 |
T |
|
| Q |
201 |
ttagttttaggttcaaactacta |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49206701 |
ttagttttaggttcaaactacta |
49206679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49201946 - 49201713
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
49201946 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccacctctgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggag |
49201847 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttgga------gatgcaagtattaggtttacaatagcagtaccttttattgtgtgat--atgtgttttattcacca |
192 |
Q |
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| ||| |||| |||| | ||||||| ||| |||||||||||||||||| | || |||||||||||||||||||| |||||||| |||||||| |
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| T |
49201846 |
ccttatctgagaaaagcccttaattaggatgatgcaatgcaagtattaggtttatatcagtagtaccttttattgtgtgattgatgtgtttgattcacca |
49201747 |
T |
|
| Q |
193 |
gtcttttattagttttaggttcaaactactatgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
49201746 |
gtcttttattagttttaggttcaaactattatgt |
49201713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 49211481 - 49211313
Alignment:
| Q |
7 |
atgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttac |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
49211481 |
atgaaagaagttgctggtgtgtacaagatgttgccacctctgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggatccttat |
49211382 |
T |
|
| Q |
107 |
ctgacaaa-------aactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttatt |
168 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||||| ||| |||| |||||||| |
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|
| T |
49211381 |
ctgacaaaagctcttaagtcttaattaggagatgcaagtattaggtttacagtagtagtatcttttatt |
49211313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 49186966 - 49186818
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
49186966 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccacctctgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggag |
49186867 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttta |
148 |
Q |
| |
|
| ||| |||| |||| ||||| ||| ||| |||||||||||| |||||| |
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|
| T |
49186866 |
ccttatctgagaaaagctcttgattaggatgatgcaagtatttggttta |
49186818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 49190663 - 49190552
Alignment:
| Q |
7 |
atgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || ||||| || || |||||||||||| || | |
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|
| T |
49190663 |
atgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgttcatgagcaaacgggaatgttaccacctgcttggatgggagtcttgc |
49190564 |
T |
|
| Q |
107 |
ctgacaaaaact |
118 |
Q |
| |
|
|||||||||||| |
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|
| T |
49190563 |
ctgacaaaaact |
49190552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 32593616 - 32593784
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32593616 |
atgggcatgaaagaggttgctggtgtttacaagatgctgccacctctgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaa |
32593715 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttgga-gatgcaagtattaggtttacaatagcagtaccttttatt |
168 |
Q |
| |
|
| ||| | ||||||| ||||||||| ||| ||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
32593716 |
ccttatccgacaaaagctcttaattaggaggatgcaagtattaggtttatagtagtaataccttttatt |
32593784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31526782 - 31526634
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
31526782 |
atgggtatgaaagaggttgctggtgtttacaagatgttgccacctttgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggataggaa |
31526683 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttta |
148 |
Q |
| |
|
| ||| | ||||||| ||||||||| ||| ||||||||||||||||||| |
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|
| T |
31526682 |
ccttatcagacaaaagctcttaattaggaggatgcaagtattaggttta |
31526634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 51823663 - 51823495
Alignment:
| Q |
1 |
atgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
51823663 |
atgggtatgaaagaggttgctggtgtctacaagatgctgccacctctgttcaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaa |
51823564 |
T |
|
| Q |
101 |
ctttacctgacaaaaactcttaatttgga-gatgc---aagtattaggtttacaatagcagtaccttttatt |
168 |
Q |
| |
|
| ||| | ||||||| ||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
51823563 |
ccttatccgacaaaagctcttaattaggaggatgcaagaagtattaggttt---atagtagtaccttttatt |
51823495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 37030133 - 37030012
Alignment:
| Q |
4 |
ggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||| || || |||||||||||| | |
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| T |
37030133 |
ggtatgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtct |
37030034 |
T |
|
| Q |
104 |
tacctgacaaaaactcttaatt |
125 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
37030033 |
tgcctgacaaaaactcttaatt |
37030012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 26755944 - 26755869
Alignment:
| Q |
4 |
ggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgt |
79 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
26755944 |
ggtatgaaagaagttgctggtgtgtacaagatgttgccacctctgtttaagacagtccatgagcaaacaggcatgt |
26755869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 52267390 - 52267516
Alignment:
| Q |
47 |
tgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttggag-----atgcaagtatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||| ||||||||| |||| | ||||||||| |
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|
| T |
52267390 |
tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagcaagtatt |
52267489 |
T |
|
| Q |
142 |
aggtttacaatagcagtaccttttatt |
168 |
Q |
| |
|
||||||| | ||| ||||||||||||| |
|
|
| T |
52267490 |
aggtttatagtagtagtaccttttatt |
52267516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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