View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_low_14 (Length: 218)
Name: NF20075_low_14
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 19469333 - 19469201
Alignment:
| Q |
70 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc |
169 |
Q |
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| T |
19469333 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc |
19469234 |
T |
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| Q |
170 |
ggaatcagggttgttgatcaaaggacaagttag |
202 |
Q |
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| T |
19469233 |
gaaatcagagttgttgatcaaaggaccagttag |
19469201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 19469432 - 19469397
Alignment:
| Q |
16 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
51 |
Q |
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| T |
19469432 |
aagggagaacaaagaaattgcaataatcagtaaaaa |
19469397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 47866183 - 47866254
Alignment:
| Q |
124 |
taataaacaggaatgcaattagcttgttaagaaccgcatcaaactcggaatcagggttgttgatcaaaggac |
195 |
Q |
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| T |
47866183 |
taataaacaggaatgcaattagcctgttaagaaccgcatcaaactcggaatcagagttgttgatcaaaggac |
47866254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 47865981 - 47866036
Alignment:
| Q |
70 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47865981 |
aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata |
47866036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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