View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20075_low_15 (Length: 211)

Name: NF20075_low_15
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20075_low_15
NF20075_low_15
[»] chr4 (11 HSPs)
chr4 (18-108)||(37749815-37749905)
chr4 (135-211)||(12473699-12473777)
chr4 (135-211)||(12528108-12528186)
chr4 (141-211)||(33249472-33249544)
chr4 (134-202)||(52910156-52910226)
chr4 (140-211)||(35869669-35869742)
chr4 (135-211)||(21260789-21260867)
chr4 (135-211)||(55590477-55590555)
chr4 (140-193)||(22343337-22343392)
chr4 (161-197)||(35781027-35781063)
chr4 (134-211)||(52012772-52012851)
[»] chr1 (6 HSPs)
chr1 (135-200)||(29119433-29119500)
chr1 (140-202)||(2569037-2569101)
chr1 (135-211)||(32676131-32676209)
chr1 (135-191)||(46435571-46435629)
chr1 (132-211)||(8809738-8809819)
chr1 (134-200)||(25161303-25161371)
[»] chr5 (10 HSPs)
chr5 (140-202)||(19357368-19357432)
chr5 (135-202)||(1826254-1826323)
chr5 (134-211)||(39570141-39570220)
chr5 (135-202)||(11607641-11607710)
chr5 (135-211)||(13015376-13015454)
chr5 (139-211)||(38010712-38010786)
chr5 (135-202)||(9827783-9827852)
chr5 (139-202)||(13086752-13086817)
chr5 (133-211)||(29989955-29990035)
chr5 (145-211)||(33858636-33858704)
[»] chr3 (9 HSPs)
chr3 (133-201)||(32319473-32319543)
chr3 (135-202)||(10179870-10179939)
chr3 (133-200)||(47426343-47426412)
chr3 (141-211)||(50934501-50934573)
chr3 (135-202)||(33509675-33509744)
chr3 (134-211)||(47186169-47186248)
chr3 (135-202)||(10018673-10018742)
chr3 (135-200)||(44380249-44380316)
chr3 (157-202)||(37742744-37742789)
[»] chr2 (4 HSPs)
chr2 (135-202)||(34392188-34392257)
chr2 (143-211)||(7381695-7381765)
chr2 (135-211)||(21603954-21604032)
chr2 (135-200)||(37358030-37358097)
[»] chr7 (5 HSPs)
chr7 (134-211)||(48250148-48250227)
chr7 (134-211)||(35341530-35341609)
chr7 (133-203)||(40856385-40856457)
chr7 (135-188)||(40893163-40893218)
chr7 (161-197)||(48072505-48072541)
[»] chr6 (3 HSPs)
chr6 (138-202)||(11753165-11753231)
chr6 (134-211)||(5403974-5404053)
chr6 (141-199)||(1211954-1212014)
[»] scaffold0032 (1 HSPs)
scaffold0032 (135-202)||(34189-34258)
[»] chr8 (2 HSPs)
chr8 (132-211)||(41179661-41179742)
chr8 (133-211)||(24337928-24338008)
[»] scaffold0229 (1 HSPs)
scaffold0229 (141-199)||(13116-13176)
[»] scaffold0263 (2 HSPs)
scaffold0263 (168-202)||(23206-23240)
scaffold0263 (134-187)||(23087-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (135-188)||(73066-73121)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 37749815 - 37749905
Alignment:
Q  18 aattgattggcaccactggactttgactttaattaattaatgttatcattttacaacttttgttatgaagttatatgatcattctgtttca 108  Q
    ||||||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  37749815 aattgattggcaatactggactttgactttaattaattaatgttctcattttactacttttgttttgaagttatatgatcattctgtttca 37749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 12473699 - 12473777
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 12528108 - 12528186
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12528186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 33249544 - 33249472
Alignment:
Q  141 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||||  |||| |||||||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttact 33249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 52910226 - 52910156
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||||| |||||||||||||| |  |||| |||| |||||||||||||||||||| |||||||||||||||    
T  52910226 gggataacacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 35869742 - 35869669
Alignment:
Q  140 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||| | ||||||||||||| ||| ||||    
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttact 35869669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 21260789 - 21260867
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| |||||| | ||||||||  |||| |||| |||||| |||||||||||||||||||| |||||||| ||| ||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttact 21260867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 55590477 - 55590555
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| |||||||||||||||||  |||| ||||||||||| |||||  |||||| |||||| |||||||| ||| ||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttact 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 22343337 - 22343392
Alignment:
Q  140 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtg 193  Q
    |||||||||||||||||  |||  ||||||||||| ||||| ||||||||||||||    
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  161 taatggtatataccattggccaattagagtgtgccac 197  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 52012772 - 52012851
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| ||||||||||||||||||  |||| |||| |||||| ||||| ||||| | |||||||||| |||| ||| ||||    
T  52012772 gggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttact 52012851  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 29119500 - 29119433
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccaccta 200  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 2569037 - 2569101
Alignment:
Q  140 ccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||||||||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 32676131 - 32676209
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| |||||||||||||||||  |||| ||||||||||||||||||||||||||| ||  ||||||||| ||| ||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttact 32676209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtg 191  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 8809819 - 8809738
Alignment:
Q  132 ttgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||||| ||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  8809819 ttgggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttact 8809738  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 25161303 - 25161371
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccaccta 200  Q
    ||||| |||||||||||||||||  ||   ||||||||||||||||| ||||||| |||||||||||||    
T  25161303 gggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccaccta 25161371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 19357432 - 19357368
Alignment:
Q  140 ccacttgtgtaccattag--tactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 1826254 - 1826323
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 39570220 - 39570141
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||| ||||||||||| |||||  |||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  39570220 gggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttact 39570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 11607710 - 11607641
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| |||||||| ||||||||  |||| ||||||||||||||||| ||||||| |||||||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 13015376 - 13015454
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 38010786 - 38010712
Alignment:
Q  139 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||||||  |||| |||| |||||| ||||||||||| |||||||||||| |||| ||| ||||    
T  38010786 accacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 38010712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 9827783 - 9827852
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| |||||||||||||||||  |||| ||||||||||||| || | |||||||||||| |||||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctacc 9827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 13086752 - 13086817
Alignment:
Q  139 accacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    ||||||||||||||||||  |||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13086752 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 29989955 - 29990035
Alignment:
Q  133 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||| ||||||||||||||||||  |||  |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  29989955 tgggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttact 29990035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 33858704 - 33858636
Alignment:
Q  145 tgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||  |||| ||| ||||||| ||||| ||||||| ||||||||||||||| ||| ||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttact 33858636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 32319543 - 32319473
Alignment:
Q  133 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctac 201  Q
    |||||| | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  32319543 tgggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 10179939 - 10179870
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| |||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 47426343 - 47426412
Alignment:
Q  133 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccaccta 200  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||||||||||||||||||||| ||||||    
T  47426343 tgggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 50934501 - 50934573
Alignment:
Q  141 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttact 50934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 33509675 - 33509744
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    ||||| || |||||||||||||  |||||||| ||||||| ||||| |||||||||||||||||||||||    
T  33509675 ggatatcatttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 47186169 - 47186248
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| ||||||||||||||||||  |||| |||| |||||| ||||||||||| |||||||||||| |||| ||| ||||    
T  47186169 gggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 47186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 10018742 - 10018673
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| |||||||||||||||||  |||| |||| ||||||||||||| |||| | |||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 44380249 - 44380316
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccaccta 200  Q
    |||| |||||||||||||||||  |||| |||||||||||| |||| ||||||| |||||| ||||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 37742744 - 37742789
Alignment:
Q  157 gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| ||||||||||| |||||| |||||||||| |||||||||||    
T  37742744 gtaccaatggtatatatcattggtcaattagagtatgccacctacc 37742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 34392257 - 34392188
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 7381695 - 7381765
Alignment:
Q  143 cttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||  |||| |||||||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttact 7381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 21603954 - 21604032
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||| |||||||||||||||||  |||| ||||||||||||||||| ||||||| |||||  |||||||| ||| ||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttact 21604032  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 37358097 - 37358030
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccaccta 200  Q
    |||| ||||||||||| |||||  |||| |||| |||||||||||| | |||||||||||| ||||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 48250148 - 48250227
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||||||||||||||||||||||  |||| |||| |||||| |||||| |||||||||||||||||||||| ||| ||||    
T  48250148 gggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttact 48250227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 35341530 - 35341609
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||| |||||||||||||||||  |||| |||| |||||||||||| ||||||| ||||||||||||||| ||| ||||    
T  35341530 gggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttact 35341609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 40856385 - 40856457
Alignment:
Q  133 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacct 203  Q
    ||||||||||||| |||| |||||  ||||||||| ||||||  ||||  ||||||||||||| |||||||||    
T  40856385 tgggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacct 40856457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 40893218 - 40893163
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattaga 188  Q
    ||||||||||||| |||||| |  ||| ||||||||||||||||||| ||||||||    
T  40893218 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 40893163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  161 taatggtatataccattggccaattagagtgtgccac 197  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 11753165 - 11753231
Alignment:
Q  138 taccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  11753165 taccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 5404053 - 5403974
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    |||||||||||||||||||||||  ||||||||||||||||  ||||| || ||||||| ||||||||||| ||| ||||    
T  5404053 gggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttact 5403974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 1212014 - 1211954
Alignment:
Q  141 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacct 199  Q
    ||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||||||||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 34189 - 34258
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacc 202  Q
    |||| |||||||||||||||||  |||| |||||||||||  ||||||||||||||||||||||| ||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 41179742 - 41179661
Alignment:
Q  132 ttgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||| |||||||||||||||||  |||| |||| |||||| ||||||||||||| |||||| |||||||| ||| ||||    
T  41179742 ttgggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttact 41179661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 24338008 - 24337928
Alignment:
Q  133 tgggataccacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 211  Q
    ||||||||||||||||||| ||||  |||  ||||||||||||||| || |||||||||||||||| ||||| ||| ||||    
T  24338008 tgggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttact 24337928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 13176 - 13116
Alignment:
Q  141 cacttgtgtaccatta--gtactaatggtatataccattggccaattagagtgtgccacct 199  Q
    ||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||||||||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 23240 - 23206
Alignment:
Q  168 atataccattggccaattagagtgtgccacctacc 202  Q
    ||||| |||||||||||||||||||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctacc 23206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 23087 - 23142
Alignment:
Q  134 gggataccacttgtgtaccatta--gtactaatggtatataccattggccaattag 187  Q
    |||||| |||||||||| |||||  |||| |||||||||||| |||||||||||||    
T  23087 gggataacacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 73066 - 73121
Alignment:
Q  135 ggataccacttgtgtaccatta--gtactaatggtatataccattggccaattaga 188  Q
    ||||||||||||| |||||| |  ||| ||||||||||||||||||| ||||||||    
T  73066 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 73121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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